Strain Fitness in Variovorax sp. SCN45 around GFF1385

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1384 and GFF1385 are separated by 61 nucleotidesGFF1385 and GFF1386 are separated by 102 nucleotides GFF1384 - Nitrilotriacetate monooxygenase component A (EC 1.14.13.-), at 730,027 to 731,358 GFF1384 GFF1385 - Multidrug resistance transporter, Bcr/CflA family, at 731,420 to 732,634 GFF1385 GFF1386 - Uncharacterized transporter YebQ, major facilitator superfamily (MFS), at 732,737 to 734,095 GFF1386 Position (kb) 731 732 733Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 730.486 kb on + strand, within GFF1384at 730.486 kb on + strand, within GFF1384at 730.486 kb on + strand, within GFF1384at 730.487 kb on - strand, within GFF1384at 730.507 kb on + strand, within GFF1384at 730.508 kb on - strand, within GFF1384at 730.650 kb on + strand, within GFF1384at 730.651 kb on - strand, within GFF1384at 730.783 kb on + strand, within GFF1384at 730.924 kb on + strand, within GFF1384at 730.925 kb on - strand, within GFF1384at 731.108 kb on - strand, within GFF1384at 731.287 kb on + strandat 731.287 kb on + strandat 731.288 kb on - strandat 731.288 kb on - strandat 731.298 kb on + strandat 731.298 kb on + strandat 731.298 kb on + strandat 731.298 kb on + strandat 731.298 kb on + strandat 731.298 kb on + strandat 731.299 kb on - strandat 731.299 kb on - strandat 731.299 kb on - strandat 731.299 kb on - strandat 731.299 kb on - strandat 731.356 kb on + strandat 731.357 kb on - strandat 731.498 kb on + strandat 731.498 kb on + strandat 731.498 kb on + strandat 731.498 kb on + strandat 731.498 kb on + strandat 731.498 kb on + strandat 731.498 kb on + strandat 731.499 kb on - strandat 731.499 kb on - strandat 731.499 kb on - strandat 731.499 kb on - strandat 731.499 kb on - strandat 731.499 kb on - strandat 731.499 kb on - strandat 731.606 kb on + strand, within GFF1385at 731.607 kb on - strand, within GFF1385at 731.648 kb on + strand, within GFF1385at 731.648 kb on + strand, within GFF1385at 731.648 kb on + strand, within GFF1385at 731.648 kb on + strand, within GFF1385at 731.649 kb on - strand, within GFF1385at 732.029 kb on + strand, within GFF1385at 732.056 kb on + strand, within GFF1385at 732.107 kb on + strand, within GFF1385at 732.107 kb on + strand, within GFF1385at 732.108 kb on - strand, within GFF1385at 732.164 kb on + strand, within GFF1385at 732.164 kb on + strand, within GFF1385at 732.164 kb on + strand, within GFF1385at 732.164 kb on + strand, within GFF1385at 732.164 kb on + strand, within GFF1385at 732.164 kb on + strand, within GFF1385at 732.164 kb on + strand, within GFF1385at 732.164 kb on + strand, within GFF1385at 732.165 kb on - strand, within GFF1385at 732.165 kb on - strand, within GFF1385at 732.165 kb on - strand, within GFF1385at 732.165 kb on - strand, within GFF1385at 732.165 kb on - strand, within GFF1385at 732.165 kb on - strand, within GFF1385at 732.165 kb on - strand, within GFF1385at 732.165 kb on - strand, within GFF1385at 732.165 kb on - strand, within GFF1385at 732.165 kb on - strand, within GFF1385at 732.308 kb on + strand, within GFF1385at 732.309 kb on - strand, within GFF1385at 732.309 kb on - strand, within GFF1385at 732.353 kb on + strand, within GFF1385at 732.354 kb on - strand, within GFF1385at 732.354 kb on - strand, within GFF1385at 732.685 kb on - strandat 732.685 kb on - strandat 732.863 kb on + strandat 732.935 kb on + strand, within GFF1386at 732.935 kb on + strand, within GFF1386at 732.936 kb on - strand, within GFF1386at 732.936 kb on - strand, within GFF1386at 733.082 kb on + strand, within GFF1386at 733.082 kb on + strand, within GFF1386at 733.082 kb on + strand, within GFF1386at 733.082 kb on + strand, within GFF1386at 733.083 kb on - strand, within GFF1386at 733.083 kb on - strand, within GFF1386at 733.083 kb on - strand, within GFF1386at 733.083 kb on - strand, within GFF1386at 733.455 kb on - strand, within GFF1386at 733.574 kb on + strand, within GFF1386at 733.574 kb on + strand, within GFF1386at 733.574 kb on - strand, within GFF1386at 733.575 kb on - strand, within GFF1386at 733.575 kb on - strand, within GFF1386

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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730,486 + GFF1384 0.34 -1.8
730,486 + GFF1384 0.34 +1.1
730,486 + GFF1384 0.34 -0.4
730,487 - GFF1384 0.35 +1.4
730,507 + GFF1384 0.36 -0.1
730,508 - GFF1384 0.36 +0.6
730,650 + GFF1384 0.47 -1.2
730,651 - GFF1384 0.47 +0.6
730,783 + GFF1384 0.57 -3.3
730,924 + GFF1384 0.67 +1.4
730,925 - GFF1384 0.67 -1.9
731,108 - GFF1384 0.81 +0.2
731,287 + -0.6
731,287 + +2.8
731,288 - +0.5
731,288 - -1.5
731,298 + +0.2
731,298 + -2.3
731,298 + +0.6
731,298 + -1.2
731,298 + +1.2
731,298 + -1.2
731,299 - +0.7
731,299 - -2.4
731,299 - +0.6
731,299 - -2.1
731,299 - -0.8
731,356 + +1.3
731,357 - +1.3
731,498 + +0.4
731,498 + -1.4
731,498 + -0.5
731,498 + +0.2
731,498 + +2.8
731,498 + +1.8
731,498 + -1.1
731,499 - -1.0
731,499 - -2.8
731,499 - -0.4
731,499 - +1.4
731,499 - -2.9
731,499 - +0.3
731,499 - -0.5
731,606 + GFF1385 0.15 -1.0
731,607 - GFF1385 0.15 -0.5
731,648 + GFF1385 0.19 -1.2
731,648 + GFF1385 0.19 -2.1
731,648 + GFF1385 0.19 +0.1
731,648 + GFF1385 0.19 -0.2
731,649 - GFF1385 0.19 -0.8
732,029 + GFF1385 0.50 +1.7
732,056 + GFF1385 0.52 +2.5
732,107 + GFF1385 0.57 -1.0
732,107 + GFF1385 0.57 -0.1
732,108 - GFF1385 0.57 +0.3
732,164 + GFF1385 0.61 -0.2
732,164 + GFF1385 0.61 +1.7
732,164 + GFF1385 0.61 -1.2
732,164 + GFF1385 0.61 -1.0
732,164 + GFF1385 0.61 -0.2
732,164 + GFF1385 0.61 +0.8
732,164 + GFF1385 0.61 -0.4
732,164 + GFF1385 0.61 -0.2
732,165 - GFF1385 0.61 +1.8
732,165 - GFF1385 0.61 -2.2
732,165 - GFF1385 0.61 -0.3
732,165 - GFF1385 0.61 -2.4
732,165 - GFF1385 0.61 +0.8
732,165 - GFF1385 0.61 -2.7
732,165 - GFF1385 0.61 +0.2
732,165 - GFF1385 0.61 +1.5
732,165 - GFF1385 0.61 +2.0
732,165 - GFF1385 0.61 +0.2
732,308 + GFF1385 0.73 +0.9
732,309 - GFF1385 0.73 +0.4
732,309 - GFF1385 0.73 -0.8
732,353 + GFF1385 0.77 -0.4
732,354 - GFF1385 0.77 -4.0
732,354 - GFF1385 0.77 +0.1
732,685 - +0.1
732,685 - +2.4
732,863 + -1.6
732,935 + GFF1386 0.15 +2.5
732,935 + GFF1386 0.15 -1.3
732,936 - GFF1386 0.15 -0.9
732,936 - GFF1386 0.15 -0.6
733,082 + GFF1386 0.25 +1.1
733,082 + GFF1386 0.25 +0.0
733,082 + GFF1386 0.25 +0.7
733,082 + GFF1386 0.25 -0.5
733,083 - GFF1386 0.25 +2.5
733,083 - GFF1386 0.25 -0.3
733,083 - GFF1386 0.25 +1.1
733,083 - GFF1386 0.25 -1.3
733,455 - GFF1386 0.53 -3.2
733,574 + GFF1386 0.62 -0.3
733,574 + GFF1386 0.62 +0.7
733,574 - GFF1386 0.62 +0.3
733,575 - GFF1386 0.62 -1.8
733,575 - GFF1386 0.62 -1.4

Or see this region's nucleotide sequence