Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF129 and GFF130 are separated by 196 nucleotides GFF130 and GFF131 are separated by 120 nucleotides GFF131 and GFF132 are separated by 120 nucleotides
GFF129 - Ankyrin, at 157,166 to 158,812
GFF129
GFF130 - hypothetical protein, at 159,009 to 159,206
GFF130
GFF131 - L-glyceraldehyde 3-phosphate reductase, at 159,327 to 160,367
GFF131
GFF132 - ABC transporter, substrate-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 160,488 to 161,459
GFF132
Position (kb) 159
160
161 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 158.787 kb on - strand at 158.810 kb on + strand at 158.810 kb on + strand at 158.864 kb on + strand at 158.864 kb on + strand at 158.981 kb on + strand at 158.982 kb on - strand at 158.982 kb on - strand at 159.079 kb on + strand, within GFF130 at 159.080 kb on - strand, within GFF130 at 159.080 kb on - strand, within GFF130 at 159.187 kb on + strand at 159.187 kb on + strand at 159.188 kb on - strand at 159.285 kb on - strand at 159.382 kb on + strand at 159.382 kb on + strand at 159.383 kb on - strand at 159.383 kb on - strand at 159.383 kb on - strand at 159.383 kb on - strand at 159.667 kb on + strand, within GFF131 at 159.667 kb on + strand, within GFF131 at 159.667 kb on + strand, within GFF131 at 159.667 kb on + strand, within GFF131 at 159.668 kb on - strand, within GFF131 at 159.668 kb on - strand, within GFF131 at 159.778 kb on + strand, within GFF131 at 159.779 kb on - strand, within GFF131 at 159.856 kb on + strand, within GFF131 at 159.857 kb on - strand, within GFF131 at 159.857 kb on - strand, within GFF131 at 159.874 kb on + strand, within GFF131 at 159.874 kb on + strand, within GFF131 at 159.874 kb on + strand, within GFF131 at 159.874 kb on + strand, within GFF131 at 159.875 kb on - strand, within GFF131 at 159.875 kb on - strand, within GFF131 at 159.958 kb on + strand, within GFF131 at 159.973 kb on + strand, within GFF131 at 160.021 kb on + strand, within GFF131 at 160.022 kb on - strand, within GFF131 at 160.022 kb on - strand, within GFF131 at 160.048 kb on + strand, within GFF131 at 160.172 kb on - strand, within GFF131 at 160.172 kb on - strand, within GFF131 at 160.360 kb on + strand at 160.360 kb on + strand at 160.361 kb on - strand at 160.430 kb on + strand at 160.681 kb on + strand, within GFF132 at 160.682 kb on - strand, within GFF132 at 160.684 kb on + strand, within GFF132 at 160.684 kb on + strand, within GFF132 at 160.996 kb on + strand, within GFF132 at 160.996 kb on + strand, within GFF132 at 160.997 kb on - strand, within GFF132 at 161.008 kb on + strand, within GFF132 at 161.008 kb on + strand, within GFF132 at 161.008 kb on + strand, within GFF132 at 161.009 kb on - strand, within GFF132 at 161.009 kb on - strand, within GFF132 at 161.170 kb on + strand, within GFF132 at 161.170 kb on + strand, within GFF132
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 158,787 - -1.0 158,810 + -0.1 158,810 + -1.1 158,864 + -2.4 158,864 + -0.8 158,981 + +0.0 158,982 - -1.1 158,982 - -0.7 159,079 + GFF130 0.35 +1.3 159,080 - GFF130 0.36 -2.9 159,080 - GFF130 0.36 -2.9 159,187 + +1.2 159,187 + -2.6 159,188 - -1.2 159,285 - -1.1 159,382 + -0.6 159,382 + -1.4 159,383 - +0.4 159,383 - -1.6 159,383 - +0.2 159,383 - +2.1 159,667 + GFF131 0.33 -1.3 159,667 + GFF131 0.33 +1.8 159,667 + GFF131 0.33 -1.8 159,667 + GFF131 0.33 -1.4 159,668 - GFF131 0.33 -1.0 159,668 - GFF131 0.33 +1.0 159,778 + GFF131 0.43 +1.2 159,779 - GFF131 0.43 +0.5 159,856 + GFF131 0.51 +1.7 159,857 - GFF131 0.51 +0.3 159,857 - GFF131 0.51 -1.0 159,874 + GFF131 0.53 -0.4 159,874 + GFF131 0.53 -0.3 159,874 + GFF131 0.53 -0.2 159,874 + GFF131 0.53 +1.1 159,875 - GFF131 0.53 -1.6 159,875 - GFF131 0.53 +0.8 159,958 + GFF131 0.61 -1.2 159,973 + GFF131 0.62 -0.6 160,021 + GFF131 0.67 -2.4 160,022 - GFF131 0.67 +0.3 160,022 - GFF131 0.67 +2.8 160,048 + GFF131 0.69 +0.6 160,172 - GFF131 0.81 -1.7 160,172 - GFF131 0.81 -1.2 160,360 + -1.2 160,360 + +1.3 160,361 - +0.6 160,430 + -1.2 160,681 + GFF132 0.20 -1.7 160,682 - GFF132 0.20 -1.8 160,684 + GFF132 0.20 -0.9 160,684 + GFF132 0.20 -0.2 160,996 + GFF132 0.52 -1.1 160,996 + GFF132 0.52 +0.2 160,997 - GFF132 0.52 -1.6 161,008 + GFF132 0.53 +0.6 161,008 + GFF132 0.53 -2.1 161,008 + GFF132 0.53 -1.7 161,009 - GFF132 0.54 -0.8 161,009 - GFF132 0.54 +1.7 161,170 + GFF132 0.70 +2.1 161,170 + GFF132 0.70 -1.0
Or see this region's nucleotide sequence