Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF118 and GFF119 overlap by 4 nucleotides GFF119 and GFF120 are separated by 228 nucleotides
GFF118 - putative membrane protein, at 145,553 to 146,578
GFF118
GFF119 - FIG00348677: hypothetical protein, at 146,575 to 148,503
GFF119
GFF120 - Two-component transcriptional response regulator, LuxR family, at 148,732 to 149,274
GFF120
Position (kb) 146
147
148
149 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 145.643 kb on + strand at 145.644 kb on - strand at 145.674 kb on + strand, within GFF118 at 145.674 kb on + strand, within GFF118 at 145.675 kb on - strand, within GFF118 at 145.675 kb on - strand, within GFF118 at 145.675 kb on - strand, within GFF118 at 145.675 kb on - strand, within GFF118 at 145.675 kb on - strand, within GFF118 at 145.761 kb on - strand, within GFF118 at 145.926 kb on - strand, within GFF118 at 145.953 kb on - strand, within GFF118 at 145.995 kb on - strand, within GFF118 at 145.995 kb on - strand, within GFF118 at 145.995 kb on - strand, within GFF118 at 146.204 kb on + strand, within GFF118 at 146.204 kb on + strand, within GFF118 at 146.204 kb on + strand, within GFF118 at 146.204 kb on + strand, within GFF118 at 146.204 kb on + strand, within GFF118 at 146.205 kb on - strand, within GFF118 at 146.205 kb on - strand, within GFF118 at 146.205 kb on - strand, within GFF118 at 146.210 kb on + strand, within GFF118 at 146.210 kb on + strand, within GFF118 at 146.210 kb on + strand, within GFF118 at 146.211 kb on - strand, within GFF118 at 146.211 kb on - strand, within GFF118 at 146.300 kb on + strand, within GFF118 at 146.400 kb on - strand, within GFF118 at 146.411 kb on + strand, within GFF118 at 146.411 kb on + strand, within GFF118 at 146.418 kb on - strand, within GFF118 at 146.681 kb on - strand at 146.966 kb on - strand, within GFF119 at 146.972 kb on - strand, within GFF119 at 146.972 kb on - strand, within GFF119 at 147.043 kb on + strand, within GFF119 at 147.043 kb on + strand, within GFF119 at 147.044 kb on - strand, within GFF119 at 147.044 kb on - strand, within GFF119 at 147.044 kb on - strand, within GFF119 at 147.049 kb on + strand, within GFF119 at 147.050 kb on - strand, within GFF119 at 147.050 kb on - strand, within GFF119 at 147.088 kb on + strand, within GFF119 at 147.317 kb on - strand, within GFF119 at 147.364 kb on - strand, within GFF119 at 147.601 kb on + strand, within GFF119 at 147.601 kb on + strand, within GFF119 at 147.728 kb on - strand, within GFF119 at 147.728 kb on - strand, within GFF119 at 147.745 kb on + strand, within GFF119 at 147.745 kb on + strand, within GFF119 at 147.745 kb on + strand, within GFF119 at 147.745 kb on + strand, within GFF119 at 147.745 kb on + strand, within GFF119 at 147.746 kb on - strand, within GFF119 at 147.949 kb on + strand, within GFF119 at 148.360 kb on + strand at 148.583 kb on + strand at 148.584 kb on - strand at 148.584 kb on - strand at 148.584 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 145,643 + +1.0 145,644 - -1.5 145,674 + GFF118 0.12 +0.3 145,674 + GFF118 0.12 -1.1 145,675 - GFF118 0.12 +3.1 145,675 - GFF118 0.12 -2.1 145,675 - GFF118 0.12 -2.4 145,675 - GFF118 0.12 -1.3 145,675 - GFF118 0.12 -1.4 145,761 - GFF118 0.20 -1.1 145,926 - GFF118 0.36 +0.8 145,953 - GFF118 0.39 -1.9 145,995 - GFF118 0.43 -1.8 145,995 - GFF118 0.43 -2.0 145,995 - GFF118 0.43 +0.9 146,204 + GFF118 0.63 -3.0 146,204 + GFF118 0.63 +0.3 146,204 + GFF118 0.63 -2.9 146,204 + GFF118 0.63 -1.7 146,204 + GFF118 0.63 -2.1 146,205 - GFF118 0.64 -0.6 146,205 - GFF118 0.64 -1.4 146,205 - GFF118 0.64 +1.8 146,210 + GFF118 0.64 +0.1 146,210 + GFF118 0.64 -0.9 146,210 + GFF118 0.64 -1.2 146,211 - GFF118 0.64 -2.1 146,211 - GFF118 0.64 -0.2 146,300 + GFF118 0.73 -0.6 146,400 - GFF118 0.83 +0.5 146,411 + GFF118 0.84 -1.7 146,411 + GFF118 0.84 -2.0 146,418 - GFF118 0.84 -2.0 146,681 - -0.8 146,966 - GFF119 0.20 -2.3 146,972 - GFF119 0.21 +0.2 146,972 - GFF119 0.21 -0.3 147,043 + GFF119 0.24 -0.2 147,043 + GFF119 0.24 -0.2 147,044 - GFF119 0.24 -1.9 147,044 - GFF119 0.24 +0.4 147,044 - GFF119 0.24 -1.8 147,049 + GFF119 0.25 +0.3 147,050 - GFF119 0.25 -3.0 147,050 - GFF119 0.25 -0.7 147,088 + GFF119 0.27 -1.2 147,317 - GFF119 0.38 +0.0 147,364 - GFF119 0.41 -1.6 147,601 + GFF119 0.53 -1.0 147,601 + GFF119 0.53 -1.0 147,728 - GFF119 0.60 -0.9 147,728 - GFF119 0.60 -2.2 147,745 + GFF119 0.61 +0.2 147,745 + GFF119 0.61 -0.4 147,745 + GFF119 0.61 -3.1 147,745 + GFF119 0.61 -0.2 147,745 + GFF119 0.61 +0.4 147,746 - GFF119 0.61 -1.7 147,949 + GFF119 0.71 -0.6 148,360 + -0.2 148,583 + +0.1 148,584 - -1.4 148,584 - -2.4 148,584 - -0.1
Or see this region's nucleotide sequence