Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1064 and GFF1065 are separated by 59 nucleotides GFF1065 and GFF1066 overlap by 4 nucleotides GFF1066 and GFF1067 are separated by 11 nucleotides GFF1067 and GFF1068 are separated by 2 nucleotides
GFF1064 - Transcriptional regulator, GntR family, at 377,419 to 378,153
GFF1064
GFF1065 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 378,213 to 379,046
GFF1065
GFF1066 - Aspartate aminotransferase (EC 2.6.1.1), at 379,043 to 380,218
GFF1066
GFF1067 - Hydrolase, alpha/beta fold family, at 380,230 to 381,111
GFF1067
GFF1068 - Beta-ureidopropionase (EC 3.5.1.6), at 381,114 to 382,403
GFF1068
Position (kb) 379
380
381 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 378.242 kb on - strand at 378.375 kb on + strand, within GFF1065 at 378.375 kb on + strand, within GFF1065 at 378.376 kb on - strand, within GFF1065 at 378.558 kb on + strand, within GFF1065 at 378.558 kb on + strand, within GFF1065 at 378.559 kb on - strand, within GFF1065 at 378.583 kb on - strand, within GFF1065 at 378.660 kb on + strand, within GFF1065 at 378.661 kb on - strand, within GFF1065 at 378.661 kb on - strand, within GFF1065 at 378.859 kb on - strand, within GFF1065 at 378.859 kb on - strand, within GFF1065 at 378.933 kb on + strand, within GFF1065 at 378.934 kb on - strand, within GFF1065 at 379.238 kb on + strand, within GFF1066 at 379.239 kb on - strand, within GFF1066 at 379.239 kb on - strand, within GFF1066 at 379.239 kb on - strand, within GFF1066 at 379.239 kb on - strand, within GFF1066 at 379.538 kb on + strand, within GFF1066 at 379.538 kb on + strand, within GFF1066 at 379.538 kb on + strand, within GFF1066 at 379.539 kb on - strand, within GFF1066 at 379.539 kb on - strand, within GFF1066 at 379.571 kb on - strand, within GFF1066 at 379.574 kb on + strand, within GFF1066 at 379.574 kb on + strand, within GFF1066 at 379.574 kb on + strand, within GFF1066 at 379.575 kb on - strand, within GFF1066 at 379.575 kb on - strand, within GFF1066 at 379.575 kb on - strand, within GFF1066 at 379.649 kb on + strand, within GFF1066 at 379.650 kb on - strand, within GFF1066 at 379.795 kb on - strand, within GFF1066 at 379.795 kb on - strand, within GFF1066 at 380.078 kb on + strand, within GFF1066 at 380.078 kb on + strand, within GFF1066 at 380.078 kb on + strand, within GFF1066 at 380.266 kb on + strand at 380.267 kb on - strand at 380.269 kb on + strand at 380.269 kb on + strand at 380.597 kb on - strand, within GFF1067 at 380.913 kb on - strand, within GFF1067 at 380.913 kb on - strand, within GFF1067 at 381.144 kb on - strand at 381.144 kb on - strand at 381.144 kb on - strand at 381.144 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 378,242 - +0.3 378,375 + GFF1065 0.19 -1.6 378,375 + GFF1065 0.19 +0.1 378,376 - GFF1065 0.20 -1.3 378,558 + GFF1065 0.41 -2.3 378,558 + GFF1065 0.41 +1.8 378,559 - GFF1065 0.41 -0.3 378,583 - GFF1065 0.44 +0.3 378,660 + GFF1065 0.54 -0.2 378,661 - GFF1065 0.54 -1.8 378,661 - GFF1065 0.54 -1.7 378,859 - GFF1065 0.77 -2.0 378,859 - GFF1065 0.77 +0.3 378,933 + GFF1065 0.86 +0.6 378,934 - GFF1065 0.86 -0.9 379,238 + GFF1066 0.17 -1.7 379,239 - GFF1066 0.17 +0.4 379,239 - GFF1066 0.17 -1.7 379,239 - GFF1066 0.17 -3.1 379,239 - GFF1066 0.17 -1.9 379,538 + GFF1066 0.42 -0.1 379,538 + GFF1066 0.42 -1.0 379,538 + GFF1066 0.42 -0.1 379,539 - GFF1066 0.42 -2.5 379,539 - GFF1066 0.42 -0.5 379,571 - GFF1066 0.45 -0.4 379,574 + GFF1066 0.45 -2.9 379,574 + GFF1066 0.45 -3.5 379,574 + GFF1066 0.45 -0.9 379,575 - GFF1066 0.45 -0.7 379,575 - GFF1066 0.45 +0.9 379,575 - GFF1066 0.45 -0.3 379,649 + GFF1066 0.52 +1.0 379,650 - GFF1066 0.52 +0.6 379,795 - GFF1066 0.64 -0.9 379,795 - GFF1066 0.64 +0.6 380,078 + GFF1066 0.88 -0.9 380,078 + GFF1066 0.88 +0.1 380,078 + GFF1066 0.88 -1.5 380,266 + -0.9 380,267 - -1.9 380,269 + -2.6 380,269 + -1.7 380,597 - GFF1067 0.42 -0.4 380,913 - GFF1067 0.77 -1.8 380,913 - GFF1067 0.77 -0.9 381,144 - -1.9 381,144 - +0.9 381,144 - -0.9 381,144 - -1.8
Or see this region's nucleotide sequence