Strain Fitness in Variovorax sp. SCN45 around GFF1026

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1024 and GFF1025 are separated by 38 nucleotidesGFF1025 and GFF1026 overlap by 4 nucleotidesGFF1026 and GFF1027 are separated by 86 nucleotides GFF1024 - Aldo/keto reductase, SCO4109 family, at 339,999 to 340,967 GFF1024 GFF1025 - Chromate transport protein ChrA, at 341,006 to 341,605 GFF1025 GFF1026 - Probable chromate transporter protein, at 341,602 to 342,168 GFF1026 GFF1027 - Ribonuclease BN, at 342,255 to 343,178 GFF1027 Position (kb) 341 342 343Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 340.657 kb on + strand, within GFF1024at 340.657 kb on + strand, within GFF1024at 340.657 kb on + strand, within GFF1024at 340.657 kb on + strand, within GFF1024at 340.657 kb on + strand, within GFF1024at 340.657 kb on + strand, within GFF1024at 340.657 kb on + strand, within GFF1024at 340.657 kb on + strand, within GFF1024at 340.658 kb on - strand, within GFF1024at 340.658 kb on - strand, within GFF1024at 340.658 kb on - strand, within GFF1024at 340.658 kb on - strand, within GFF1024at 340.658 kb on - strand, within GFF1024at 340.658 kb on - strand, within GFF1024at 340.658 kb on - strand, within GFF1024at 340.658 kb on - strand, within GFF1024at 340.807 kb on + strand, within GFF1024at 340.807 kb on + strand, within GFF1024at 340.808 kb on - strand, within GFF1024at 340.808 kb on - strand, within GFF1024at 340.808 kb on - strand, within GFF1024at 341.018 kb on + strandat 341.018 kb on + strandat 341.018 kb on + strandat 341.018 kb on + strandat 341.018 kb on + strandat 341.018 kb on + strandat 341.018 kb on + strandat 341.083 kb on + strand, within GFF1025at 341.084 kb on - strand, within GFF1025at 341.084 kb on - strand, within GFF1025at 341.101 kb on + strand, within GFF1025at 341.102 kb on - strand, within GFF1025at 341.102 kb on - strand, within GFF1025at 341.265 kb on + strand, within GFF1025at 341.265 kb on + strand, within GFF1025at 341.265 kb on + strand, within GFF1025at 341.265 kb on + strand, within GFF1025at 341.265 kb on + strand, within GFF1025at 341.266 kb on - strand, within GFF1025at 341.266 kb on - strand, within GFF1025at 341.266 kb on - strand, within GFF1025at 341.266 kb on - strand, within GFF1025at 341.266 kb on - strand, within GFF1025at 341.454 kb on - strand, within GFF1025at 341.493 kb on + strand, within GFF1025at 341.494 kb on - strand, within GFF1025at 341.494 kb on - strand, within GFF1025at 341.556 kb on + strandat 341.556 kb on + strandat 341.556 kb on + strandat 341.556 kb on + strandat 341.556 kb on + strandat 341.556 kb on + strandat 341.556 kb on + strandat 341.556 kb on + strandat 341.557 kb on - strandat 341.557 kb on - strandat 341.557 kb on - strandat 341.557 kb on - strandat 341.557 kb on - strandat 341.557 kb on - strandat 341.557 kb on - strandat 341.557 kb on - strandat 341.787 kb on + strand, within GFF1026at 341.787 kb on + strand, within GFF1026at 341.787 kb on + strand, within GFF1026at 341.787 kb on + strand, within GFF1026at 341.788 kb on - strand, within GFF1026at 341.788 kb on - strand, within GFF1026at 341.788 kb on - strand, within GFF1026at 341.788 kb on - strand, within GFF1026at 341.850 kb on - strand, within GFF1026at 341.850 kb on - strand, within GFF1026at 341.850 kb on - strand, within GFF1026at 341.858 kb on + strand, within GFF1026at 341.858 kb on + strand, within GFF1026at 341.859 kb on - strand, within GFF1026at 341.859 kb on - strand, within GFF1026at 341.942 kb on + strand, within GFF1026at 341.942 kb on + strand, within GFF1026at 341.943 kb on - strand, within GFF1026at 341.992 kb on + strand, within GFF1026at 341.992 kb on + strand, within GFF1026at 341.992 kb on + strand, within GFF1026at 341.992 kb on + strand, within GFF1026at 341.993 kb on - strand, within GFF1026at 341.993 kb on - strand, within GFF1026at 342.185 kb on - strandat 342.185 kb on - strandat 342.185 kb on - strandat 342.185 kb on - strandat 342.248 kb on + strandat 342.248 kb on + strandat 342.248 kb on + strandat 342.248 kb on + strandat 342.249 kb on - strandat 342.249 kb on - strandat 342.249 kb on - strandat 342.249 kb on - strandat 342.321 kb on + strandat 342.322 kb on - strandat 342.322 kb on - strandat 342.322 kb on - strandat 342.351 kb on + strand, within GFF1027at 342.352 kb on - strand, within GFF1027at 342.354 kb on + strand, within GFF1027at 342.354 kb on + strand, within GFF1027at 342.354 kb on + strand, within GFF1027at 342.354 kb on + strand, within GFF1027at 342.354 kb on + strand, within GFF1027at 342.354 kb on + strand, within GFF1027at 342.354 kb on + strand, within GFF1027at 342.354 kb on + strand, within GFF1027at 342.355 kb on - strand, within GFF1027at 342.355 kb on - strand, within GFF1027at 342.355 kb on - strand, within GFF1027at 342.355 kb on - strand, within GFF1027at 342.355 kb on - strand, within GFF1027at 342.355 kb on - strand, within GFF1027at 342.355 kb on - strand, within GFF1027at 342.858 kb on + strand, within GFF1027at 342.858 kb on + strand, within GFF1027at 342.858 kb on + strand, within GFF1027at 342.858 kb on + strand, within GFF1027at 342.858 kb on + strand, within GFF1027at 342.858 kb on + strand, within GFF1027at 342.858 kb on + strand, within GFF1027at 342.859 kb on - strand, within GFF1027at 342.859 kb on - strand, within GFF1027at 342.859 kb on - strand, within GFF1027at 342.859 kb on - strand, within GFF1027at 342.960 kb on + strand, within GFF1027at 342.960 kb on + strand, within GFF1027at 342.960 kb on + strand, within GFF1027at 342.960 kb on + strand, within GFF1027at 342.960 kb on + strand, within GFF1027at 342.960 kb on + strand, within GFF1027at 342.960 kb on + strand, within GFF1027at 342.961 kb on - strand, within GFF1027at 342.961 kb on - strand, within GFF1027at 342.961 kb on - strand, within GFF1027at 342.961 kb on - strand, within GFF1027at 342.961 kb on - strand, within GFF1027at 342.991 kb on - strand, within GFF1027at 343.032 kb on + strand, within GFF1027at 343.032 kb on + strand, within GFF1027at 343.032 kb on + strand, within GFF1027at 343.032 kb on + strand, within GFF1027at 343.032 kb on + strand, within GFF1027at 343.032 kb on + strand, within GFF1027at 343.032 kb on + strand, within GFF1027at 343.032 kb on + strand, within GFF1027at 343.033 kb on - strand, within GFF1027at 343.033 kb on - strand, within GFF1027at 343.033 kb on - strand, within GFF1027at 343.033 kb on - strand, within GFF1027at 343.033 kb on - strand, within GFF1027at 343.033 kb on - strand, within GFF1027at 343.033 kb on - strand, within GFF1027at 343.033 kb on - strand, within GFF1027at 343.033 kb on - strand, within GFF1027at 343.033 kb on - strand, within GFF1027at 343.033 kb on - strand, within GFF1027at 343.033 kb on - strand, within GFF1027at 343.033 kb on - strand, within GFF1027at 343.035 kb on + strand, within GFF1027at 343.035 kb on + strand, within GFF1027at 343.035 kb on + strand, within GFF1027at 343.035 kb on + strand, within GFF1027at 343.035 kb on + strand, within GFF1027at 343.036 kb on - strand, within GFF1027at 343.036 kb on - strand, within GFF1027at 343.080 kb on + strand, within GFF1027at 343.080 kb on + strand, within GFF1027at 343.080 kb on + strand, within GFF1027at 343.080 kb on + strand, within GFF1027at 343.080 kb on + strand, within GFF1027at 343.080 kb on + strand, within GFF1027at 343.081 kb on - strand, within GFF1027at 343.081 kb on - strand, within GFF1027at 343.092 kb on + strandat 343.092 kb on + strandat 343.092 kb on + strandat 343.092 kb on + strandat 343.092 kb on + strandat 343.092 kb on + strandat 343.093 kb on - strandat 343.093 kb on - strandat 343.093 kb on - strandat 343.093 kb on - strandat 343.093 kb on - strandat 343.093 kb on - strandat 343.093 kb on - strandat 343.093 kb on - strandat 343.093 kb on - strandat 343.093 kb on - strandat 343.093 kb on - strandat 343.093 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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340,657 + GFF1024 0.68 -1.2
340,657 + GFF1024 0.68 -0.1
340,657 + GFF1024 0.68 +1.0
340,657 + GFF1024 0.68 -0.7
340,657 + GFF1024 0.68 -0.9
340,657 + GFF1024 0.68 -0.9
340,657 + GFF1024 0.68 +1.5
340,657 + GFF1024 0.68 +0.3
340,658 - GFF1024 0.68 +1.6
340,658 - GFF1024 0.68 -1.7
340,658 - GFF1024 0.68 -2.6
340,658 - GFF1024 0.68 -1.4
340,658 - GFF1024 0.68 -0.7
340,658 - GFF1024 0.68 -2.9
340,658 - GFF1024 0.68 -1.6
340,658 - GFF1024 0.68 -0.6
340,807 + GFF1024 0.83 -1.7
340,807 + GFF1024 0.83 -0.4
340,808 - GFF1024 0.83 -0.1
340,808 - GFF1024 0.83 -0.5
340,808 - GFF1024 0.83 -0.3
341,018 + -0.9
341,018 + +1.1
341,018 + -0.9
341,018 + -0.3
341,018 + +1.0
341,018 + -0.1
341,018 + +0.6
341,083 + GFF1025 0.13 -0.4
341,084 - GFF1025 0.13 -0.4
341,084 - GFF1025 0.13 -1.1
341,101 + GFF1025 0.16 -0.6
341,102 - GFF1025 0.16 -2.9
341,102 - GFF1025 0.16 -0.7
341,265 + GFF1025 0.43 +0.1
341,265 + GFF1025 0.43 -0.9
341,265 + GFF1025 0.43 +1.3
341,265 + GFF1025 0.43 +0.3
341,265 + GFF1025 0.43 +0.2
341,266 - GFF1025 0.43 +0.3
341,266 - GFF1025 0.43 -1.6
341,266 - GFF1025 0.43 -0.1
341,266 - GFF1025 0.43 -2.4
341,266 - GFF1025 0.43 +1.2
341,454 - GFF1025 0.75 -1.4
341,493 + GFF1025 0.81 -0.6
341,494 - GFF1025 0.81 -1.6
341,494 - GFF1025 0.81 -1.6
341,556 + -1.9
341,556 + +1.2
341,556 + -0.5
341,556 + +0.9
341,556 + +0.0
341,556 + +1.2
341,556 + +1.0
341,556 + -0.0
341,557 - +0.1
341,557 - +0.0
341,557 - -1.6
341,557 - -1.0
341,557 - -2.0
341,557 - -1.8
341,557 - -1.4
341,557 - -3.4
341,787 + GFF1026 0.33 +1.9
341,787 + GFF1026 0.33 -0.6
341,787 + GFF1026 0.33 +0.3
341,787 + GFF1026 0.33 +1.3
341,788 - GFF1026 0.33 +1.8
341,788 - GFF1026 0.33 +0.8
341,788 - GFF1026 0.33 -1.9
341,788 - GFF1026 0.33 -2.8
341,850 - GFF1026 0.44 -3.2
341,850 - GFF1026 0.44 +1.4
341,850 - GFF1026 0.44 -0.1
341,858 + GFF1026 0.45 +0.3
341,858 + GFF1026 0.45 -1.1
341,859 - GFF1026 0.45 +0.1
341,859 - GFF1026 0.45 -0.1
341,942 + GFF1026 0.60 -0.3
341,942 + GFF1026 0.60 -2.9
341,943 - GFF1026 0.60 +1.4
341,992 + GFF1026 0.69 -0.7
341,992 + GFF1026 0.69 +0.5
341,992 + GFF1026 0.69 +0.7
341,992 + GFF1026 0.69 -0.9
341,993 - GFF1026 0.69 -0.1
341,993 - GFF1026 0.69 -0.1
342,185 - -1.6
342,185 - -1.7
342,185 - +0.6
342,185 - +0.9
342,248 + -1.0
342,248 + -1.8
342,248 + -2.9
342,248 + -1.0
342,249 - -2.4
342,249 - -0.7
342,249 - +0.3
342,249 - +0.2
342,321 + -1.5
342,322 - -2.5
342,322 - -0.4
342,322 - -2.0
342,351 + GFF1027 0.10 -0.3
342,352 - GFF1027 0.10 -3.4
342,354 + GFF1027 0.11 -1.0
342,354 + GFF1027 0.11 -0.3
342,354 + GFF1027 0.11 -0.7
342,354 + GFF1027 0.11 -0.1
342,354 + GFF1027 0.11 -1.2
342,354 + GFF1027 0.11 -2.0
342,354 + GFF1027 0.11 -0.4
342,354 + GFF1027 0.11 -1.7
342,355 - GFF1027 0.11 -0.9
342,355 - GFF1027 0.11 -3.9
342,355 - GFF1027 0.11 +0.3
342,355 - GFF1027 0.11 -1.1
342,355 - GFF1027 0.11 -2.6
342,355 - GFF1027 0.11 +0.3
342,355 - GFF1027 0.11 +0.3
342,858 + GFF1027 0.65 -1.4
342,858 + GFF1027 0.65 -0.3
342,858 + GFF1027 0.65 -0.1
342,858 + GFF1027 0.65 +1.2
342,858 + GFF1027 0.65 -2.4
342,858 + GFF1027 0.65 -0.3
342,858 + GFF1027 0.65 +1.0
342,859 - GFF1027 0.65 +0.4
342,859 - GFF1027 0.65 -1.5
342,859 - GFF1027 0.65 -0.0
342,859 - GFF1027 0.65 +1.6
342,960 + GFF1027 0.76 -1.3
342,960 + GFF1027 0.76 -1.6
342,960 + GFF1027 0.76 -0.5
342,960 + GFF1027 0.76 +0.4
342,960 + GFF1027 0.76 -2.2
342,960 + GFF1027 0.76 -0.3
342,960 + GFF1027 0.76 -1.4
342,961 - GFF1027 0.76 -2.6
342,961 - GFF1027 0.76 +1.7
342,961 - GFF1027 0.76 -0.7
342,961 - GFF1027 0.76 +1.9
342,961 - GFF1027 0.76 +1.7
342,991 - GFF1027 0.80 -0.9
343,032 + GFF1027 0.84 +0.9
343,032 + GFF1027 0.84 +0.4
343,032 + GFF1027 0.84 -1.7
343,032 + GFF1027 0.84 +0.9
343,032 + GFF1027 0.84 -0.1
343,032 + GFF1027 0.84 -1.6
343,032 + GFF1027 0.84 +3.5
343,032 + GFF1027 0.84 +2.4
343,033 - GFF1027 0.84 -2.5
343,033 - GFF1027 0.84 -0.9
343,033 - GFF1027 0.84 +0.9
343,033 - GFF1027 0.84 -1.7
343,033 - GFF1027 0.84 -1.0
343,033 - GFF1027 0.84 -0.9
343,033 - GFF1027 0.84 +2.2
343,033 - GFF1027 0.84 -1.3
343,033 - GFF1027 0.84 -0.1
343,033 - GFF1027 0.84 -0.8
343,033 - GFF1027 0.84 +0.4
343,033 - GFF1027 0.84 -0.9
343,033 - GFF1027 0.84 -0.7
343,035 + GFF1027 0.84 -0.8
343,035 + GFF1027 0.84 -1.9
343,035 + GFF1027 0.84 -0.7
343,035 + GFF1027 0.84 +0.7
343,035 + GFF1027 0.84 +0.6
343,036 - GFF1027 0.85 -0.8
343,036 - GFF1027 0.85 +0.3
343,080 + GFF1027 0.89 -0.9
343,080 + GFF1027 0.89 -0.9
343,080 + GFF1027 0.89 -0.7
343,080 + GFF1027 0.89 +2.6
343,080 + GFF1027 0.89 -1.6
343,080 + GFF1027 0.89 +0.7
343,081 - GFF1027 0.89 -0.3
343,081 - GFF1027 0.89 -0.1
343,092 + +0.3
343,092 + +0.2
343,092 + -0.9
343,092 + -0.3
343,092 + -0.4
343,092 + +1.2
343,093 - -2.1
343,093 - +2.5
343,093 - -2.6
343,093 - +0.0
343,093 - -0.5
343,093 - +0.6
343,093 - +0.7
343,093 - -1.7
343,093 - -0.1
343,093 - -0.9
343,093 - -0.5
343,093 - +0.4

Or see this region's nucleotide sequence