Strain Fitness in Variovorax sp. SCN45 around GFF10

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
9,749	+		GFF9	0.69	+0.2
9,750	-		GFF9	0.69	+0.2
9,750	-		GFF9	0.69	-2.3
9,750	-		GFF9	0.69	+1.0
9,750	-		GFF9	0.69	-0.8
9,750	-		GFF9	0.69	+1.9
9,842	+		GFF9	0.72	-0.4
9,843	-		GFF9	0.72	-0.3
10,034	+		GFF9	0.78	-0.9
10,034	+		GFF9	0.78	-2.3
10,034	+		GFF9	0.78	+0.1
10,034	+		GFF9	0.78	+1.4
10,035	-		GFF9	0.78	-0.1
10,035	-		GFF9	0.78	+1.1
10,035	-		GFF9	0.78	-1.5
10,035	-		GFF9	0.78	-0.6
10,124	+		GFF9	0.81	+1.4
10,124	+		GFF9	0.81	+0.2
10,289	+		GFF9	0.86	+1.7
10,290	-		GFF9	0.86	-0.2
10,295	+		GFF9	0.87	+3.0
10,295	+		GFF9	0.87	-0.4
10,296	-		GFF9	0.87	-1.7
10,296	-		GFF9	0.87	+0.3
10,397	+		GFF9	0.90	-1.0
10,397	+		GFF9	0.90	-0.6
10,398	-				+0.7
10,592	+				+1.3
10,592	+				+0.2
10,701	+				-0.4
10,701	+				-0.5
10,929	+		GFF10	0.20	-1.2
10,929	+		GFF10	0.20	+0.2
10,929	+		GFF10	0.20	+1.0
10,929	+		GFF10	0.20	+0.7
10,929	+		GFF10	0.20	+1.1
10,929	+		GFF10	0.20	+1.4
10,929	+		GFF10	0.20	-1.2
10,929	+		GFF10	0.20	+0.6
10,929	+		GFF10	0.20	+0.8
10,930	-		GFF10	0.20	+0.6
10,930	-		GFF10	0.20	+2.5
10,930	-		GFF10	0.20	-0.4
10,930	-		GFF10	0.20	-1.0
10,930	-		GFF10	0.20	+1.0
10,930	-		GFF10	0.20	-2.7
10,930	-		GFF10	0.20	-2.1
10,930	-		GFF10	0.20	+0.9
10,930	-		GFF10	0.20	-0.8
11,597	+		GFF10	0.78	-1.7
11,597	+		GFF10	0.78	+2.3
11,598	-		GFF10	0.78	+1.6
11,598	-		GFF10	0.78	-0.8
11,940	-				-1.6
12,166	+		GFF11	0.19	-0.2
12,166	+		GFF11	0.19	+0.6
12,166	+		GFF11	0.19	+2.3
12,167	-		GFF11	0.19	-2.4
12,325	+		GFF11	0.41	+0.8
12,325	+		GFF11	0.41	-2.9
12,326	-		GFF11	0.41	-2.8
12,493	+		GFF11	0.65	+0.0
12,739	+				-0.4
12,739	+				+0.1
12,739	+				-1.3
12,739	+				-1.8
12,739	+				-0.2
12,739	+				-1.0
12,740	-				+0.9
12,740	-				+0.4
12,815	+				-1.1
12,815	+				-0.8
12,815	+				-2.8
12,815	+				+0.8
12,816	-				+1.0
12,816	-				-1.2
12,816	-				+0.8
12,816	-				+1.2
12,816	-				+1.1
12,816	-				+0.2