Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF884 and GFF885 are separated by 141 nucleotides GFF885 and GFF886 are separated by 69 nucleotides
GFF884 - BUG/TctC family periplasmic protein, at 193,169 to 194,146
GFF884
GFF885 - Transcriptional regulator, LysR family, at 194,288 to 195,205
GFF885
GFF886 - Protein of unknown function DUF1446, at 195,275 to 196,699
GFF886
Position (kb) 194
195
196 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 193.526 kb on + strand, within GFF884 at 193.707 kb on + strand, within GFF884 at 193.707 kb on + strand, within GFF884 at 193.708 kb on - strand, within GFF884 at 193.708 kb on - strand, within GFF884 at 193.708 kb on - strand, within GFF884 at 193.816 kb on - strand, within GFF884 at 194.194 kb on + strand at 194.194 kb on + strand at 194.222 kb on - strand at 194.222 kb on - strand at 194.242 kb on + strand at 194.243 kb on - strand at 194.243 kb on - strand at 194.243 kb on - strand at 194.244 kb on + strand at 194.331 kb on + strand at 194.331 kb on + strand at 194.382 kb on + strand, within GFF885 at 194.382 kb on + strand, within GFF885 at 194.383 kb on - strand, within GFF885 at 194.383 kb on - strand, within GFF885 at 194.613 kb on + strand, within GFF885 at 195.231 kb on + strand at 195.232 kb on - strand at 195.258 kb on + strand at 195.271 kb on - strand at 195.291 kb on + strand at 195.292 kb on - strand at 195.292 kb on - strand at 195.292 kb on - strand at 195.292 kb on - strand at 195.292 kb on - strand at 195.785 kb on + strand, within GFF886 at 195.786 kb on - strand, within GFF886 at 195.983 kb on + strand, within GFF886 at 196.002 kb on - strand, within GFF886 at 196.136 kb on + strand, within GFF886
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 193,526 + GFF884 0.37 -1.5 193,707 + GFF884 0.55 +0.1 193,707 + GFF884 0.55 -1.1 193,708 - GFF884 0.55 +0.7 193,708 - GFF884 0.55 -1.4 193,708 - GFF884 0.55 -1.1 193,816 - GFF884 0.66 -2.0 194,194 + -0.1 194,194 + -2.6 194,222 - +0.8 194,222 - -0.0 194,242 + +0.7 194,243 - -2.1 194,243 - +2.3 194,243 - -3.3 194,244 + -0.8 194,331 + -0.7 194,331 + +3.1 194,382 + GFF885 0.10 -2.3 194,382 + GFF885 0.10 -2.4 194,383 - GFF885 0.10 +0.3 194,383 - GFF885 0.10 -1.9 194,613 + GFF885 0.35 -0.9 195,231 + -1.0 195,232 - -3.5 195,258 + -1.9 195,271 - -1.5 195,291 + -2.6 195,292 - -0.7 195,292 - -0.6 195,292 - -0.7 195,292 - -0.9 195,292 - +0.9 195,785 + GFF886 0.36 +0.1 195,786 - GFF886 0.36 -1.3 195,983 + GFF886 0.50 -0.3 196,002 - GFF886 0.51 -0.6 196,136 + GFF886 0.60 -1.4
Or see this region's nucleotide sequence