Strain Fitness in Variovorax sp. SCN45 around GFF88

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF86 and GFF87 overlap by 4 nucleotidesGFF87 and GFF88 are separated by 7 nucleotidesGFF88 and GFF89 are separated by 5 nucleotides GFF86 - Cell morphology protein, at 102,517 to 103,191 GFF86 GFF87 - no description, at 103,188 to 103,868 GFF87 GFF88 - Probable poly(beta-D-mannuronate) O-acetylase (EC 2.3.1.-), at 103,876 to 105,270 GFF88 GFF89 - hypothetical protein, at 105,276 to 106,388 GFF89 Position (kb) 103 104 105 106Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 102.968 kb on - strand, within GFF86at 102.980 kb on - strand, within GFF86at 102.980 kb on - strand, within GFF86at 103.273 kb on - strand, within GFF87at 103.273 kb on - strand, within GFF87at 103.405 kb on - strand, within GFF87at 103.602 kb on + strand, within GFF87at 103.602 kb on + strand, within GFF87at 103.603 kb on - strand, within GFF87at 103.603 kb on - strand, within GFF87at 103.603 kb on - strand, within GFF87at 103.934 kb on - strandat 103.934 kb on - strandat 103.934 kb on - strandat 103.993 kb on + strandat 103.993 kb on + strandat 103.994 kb on - strandat 103.994 kb on - strandat 103.994 kb on - strandat 103.994 kb on - strandat 103.994 kb on - strandat 104.138 kb on + strand, within GFF88at 104.139 kb on - strand, within GFF88at 104.139 kb on - strand, within GFF88at 104.139 kb on - strand, within GFF88at 104.139 kb on - strand, within GFF88at 104.139 kb on - strand, within GFF88at 104.139 kb on - strand, within GFF88at 104.139 kb on - strand, within GFF88at 104.150 kb on - strand, within GFF88at 104.272 kb on + strand, within GFF88at 104.272 kb on + strand, within GFF88at 104.272 kb on + strand, within GFF88at 104.273 kb on - strand, within GFF88at 104.273 kb on - strand, within GFF88at 104.335 kb on + strand, within GFF88at 104.335 kb on + strand, within GFF88at 104.335 kb on + strand, within GFF88at 104.335 kb on + strand, within GFF88at 104.336 kb on - strand, within GFF88at 104.336 kb on - strand, within GFF88at 104.336 kb on - strand, within GFF88at 104.336 kb on - strand, within GFF88at 104.569 kb on + strand, within GFF88at 104.570 kb on - strand, within GFF88at 104.570 kb on - strand, within GFF88at 104.604 kb on + strand, within GFF88at 104.604 kb on + strand, within GFF88at 104.712 kb on + strand, within GFF88at 104.712 kb on + strand, within GFF88at 104.712 kb on + strand, within GFF88at 104.713 kb on - strand, within GFF88at 104.713 kb on - strand, within GFF88at 104.713 kb on - strand, within GFF88at 104.713 kb on - strand, within GFF88at 104.740 kb on + strand, within GFF88at 104.741 kb on - strand, within GFF88at 104.741 kb on - strand, within GFF88at 104.746 kb on + strand, within GFF88at 104.857 kb on + strand, within GFF88at 104.943 kb on + strand, within GFF88at 105.100 kb on + strand, within GFF88at 105.100 kb on + strand, within GFF88at 105.101 kb on - strand, within GFF88at 105.256 kb on + strandat 105.256 kb on + strandat 105.257 kb on - strandat 105.432 kb on - strand, within GFF89at 105.710 kb on + strand, within GFF89

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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102,968 - GFF86 0.67 -3.0
102,980 - GFF86 0.69 +0.8
102,980 - GFF86 0.69 +1.0
103,273 - GFF87 0.12 -0.7
103,273 - GFF87 0.12 -2.9
103,405 - GFF87 0.32 +0.6
103,602 + GFF87 0.61 -3.1
103,602 + GFF87 0.61 +0.2
103,603 - GFF87 0.61 +1.6
103,603 - GFF87 0.61 -0.1
103,603 - GFF87 0.61 -2.0
103,934 - +0.0
103,934 - -2.4
103,934 - +0.0
103,993 + -0.1
103,993 + -0.2
103,994 - -0.7
103,994 - -1.9
103,994 - -1.9
103,994 - -3.5
103,994 - -4.6
104,138 + GFF88 0.19 -0.1
104,139 - GFF88 0.19 -1.3
104,139 - GFF88 0.19 +0.6
104,139 - GFF88 0.19 -2.8
104,139 - GFF88 0.19 +1.1
104,139 - GFF88 0.19 -2.9
104,139 - GFF88 0.19 +0.9
104,139 - GFF88 0.19 -1.7
104,150 - GFF88 0.20 -0.4
104,272 + GFF88 0.28 -2.0
104,272 + GFF88 0.28 +0.2
104,272 + GFF88 0.28 -3.7
104,273 - GFF88 0.28 +0.0
104,273 - GFF88 0.28 -1.6
104,335 + GFF88 0.33 +0.9
104,335 + GFF88 0.33 -0.3
104,335 + GFF88 0.33 +1.8
104,335 + GFF88 0.33 +1.5
104,336 - GFF88 0.33 -3.1
104,336 - GFF88 0.33 +3.3
104,336 - GFF88 0.33 -0.8
104,336 - GFF88 0.33 +0.0
104,569 + GFF88 0.50 -2.2
104,570 - GFF88 0.50 -2.0
104,570 - GFF88 0.50 -2.2
104,604 + GFF88 0.52 +0.1
104,604 + GFF88 0.52 -1.2
104,712 + GFF88 0.60 -0.4
104,712 + GFF88 0.60 +1.4
104,712 + GFF88 0.60 -1.0
104,713 - GFF88 0.60 -1.9
104,713 - GFF88 0.60 +0.0
104,713 - GFF88 0.60 -2.0
104,713 - GFF88 0.60 -0.6
104,740 + GFF88 0.62 -0.4
104,741 - GFF88 0.62 -0.7
104,741 - GFF88 0.62 +2.3
104,746 + GFF88 0.62 -3.8
104,857 + GFF88 0.70 +0.7
104,943 + GFF88 0.76 +0.5
105,100 + GFF88 0.88 -1.9
105,100 + GFF88 0.88 -0.7
105,101 - GFF88 0.88 +0.4
105,256 + -2.8
105,256 + -1.4
105,257 - -1.7
105,432 - GFF89 0.14 -1.6
105,710 + GFF89 0.39 -3.1

Or see this region's nucleotide sequence