Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF868 and GFF869 are separated by 153 nucleotides GFF869 and GFF870 are separated by 496 nucleotides
GFF868 - Uracil-DNA glycosylase, family 1, at 176,233 to 177,084
GFF868
GFF869 - Transcriptional regulator RutR of pyrimidine catabolism (TetR family), at 177,238 to 177,891
GFF869
GFF870 - TonB-dependent receptor, at 178,388 to 180,517
GFF870
Position (kb) 177
178 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 176.808 kb on + strand, within GFF868 at 176.809 kb on - strand, within GFF868 at 177.136 kb on - strand at 177.139 kb on - strand at 177.418 kb on + strand, within GFF869 at 177.419 kb on - strand, within GFF869 at 177.421 kb on + strand, within GFF869 at 177.421 kb on + strand, within GFF869 at 177.421 kb on + strand, within GFF869 at 177.422 kb on - strand, within GFF869 at 177.422 kb on - strand, within GFF869 at 177.422 kb on - strand, within GFF869 at 177.424 kb on + strand, within GFF869 at 177.424 kb on + strand, within GFF869 at 177.424 kb on + strand, within GFF869 at 177.424 kb on + strand, within GFF869 at 177.425 kb on - strand, within GFF869 at 177.425 kb on - strand, within GFF869 at 177.449 kb on - strand, within GFF869 at 177.449 kb on - strand, within GFF869 at 177.449 kb on - strand, within GFF869 at 177.542 kb on - strand, within GFF869 at 177.767 kb on + strand, within GFF869 at 177.770 kb on - strand, within GFF869 at 177.770 kb on - strand, within GFF869 at 177.778 kb on + strand, within GFF869 at 177.922 kb on + strand at 177.925 kb on - strand at 177.955 kb on + strand at 178.010 kb on + strand at 178.010 kb on + strand at 178.011 kb on - strand at 178.026 kb on - strand at 178.571 kb on + strand at 178.572 kb on - strand at 178.670 kb on + strand, within GFF870 at 178.670 kb on + strand, within GFF870 at 178.670 kb on + strand, within GFF870 at 178.671 kb on - strand, within GFF870 at 178.671 kb on - strand, within GFF870 at 178.673 kb on + strand, within GFF870 at 178.673 kb on + strand, within GFF870 at 178.674 kb on - strand, within GFF870 at 178.674 kb on - strand, within GFF870
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 176,808 + GFF868 0.67 -0.8 176,809 - GFF868 0.68 -0.5 177,136 - -3.1 177,139 - +0.7 177,418 + GFF869 0.28 -3.5 177,419 - GFF869 0.28 -3.0 177,421 + GFF869 0.28 +1.4 177,421 + GFF869 0.28 -0.2 177,421 + GFF869 0.28 -0.8 177,422 - GFF869 0.28 -3.0 177,422 - GFF869 0.28 +0.2 177,422 - GFF869 0.28 -1.7 177,424 + GFF869 0.28 -2.3 177,424 + GFF869 0.28 +0.8 177,424 + GFF869 0.28 +1.3 177,424 + GFF869 0.28 +0.2 177,425 - GFF869 0.29 -0.2 177,425 - GFF869 0.29 -1.8 177,449 - GFF869 0.32 +0.2 177,449 - GFF869 0.32 -2.1 177,449 - GFF869 0.32 -1.0 177,542 - GFF869 0.46 -2.0 177,767 + GFF869 0.81 +1.7 177,770 - GFF869 0.81 +0.7 177,770 - GFF869 0.81 -2.1 177,778 + GFF869 0.83 -0.3 177,922 + -1.4 177,925 - -0.2 177,955 + -1.0 178,010 + -1.7 178,010 + -3.4 178,011 - -1.3 178,026 - +0.5 178,571 + +1.0 178,572 - +2.0 178,670 + GFF870 0.13 +0.3 178,670 + GFF870 0.13 -1.4 178,670 + GFF870 0.13 -2.4 178,671 - GFF870 0.13 -1.8 178,671 - GFF870 0.13 +0.1 178,673 + GFF870 0.13 -0.5 178,673 + GFF870 0.13 +0.0 178,674 - GFF870 0.13 -0.3 178,674 - GFF870 0.13 -1.8
Or see this region's nucleotide sequence