Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF835 and GFF836 overlap by 4 nucleotides GFF836 and GFF837 are separated by 34 nucleotides GFF837 and GFF838 overlap by 4 nucleotides
GFF835 - Two-component system sensor histidine kinase, at 140,351 to 141,631
GFF835
GFF836 - Vitamin B12 ABC transporter, substrate-binding protein BtuF, at 141,628 to 142,569
GFF836
GFF837 - FIG01002808: hypothetical protein, at 142,604 to 143,455
GFF837
GFF838 - hypothetical protein, at 143,452 to 144,552
GFF838
Position (kb) 141
142
143 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 140.843 kb on + strand, within GFF835 at 140.843 kb on + strand, within GFF835 at 140.844 kb on - strand, within GFF835 at 140.844 kb on - strand, within GFF835 at 140.844 kb on - strand, within GFF835 at 140.844 kb on - strand, within GFF835 at 141.180 kb on + strand, within GFF835 at 141.181 kb on - strand, within GFF835 at 141.181 kb on - strand, within GFF835 at 141.214 kb on + strand, within GFF835 at 141.214 kb on + strand, within GFF835 at 141.214 kb on + strand, within GFF835 at 141.214 kb on + strand, within GFF835 at 141.215 kb on - strand, within GFF835 at 141.215 kb on - strand, within GFF835 at 141.215 kb on - strand, within GFF835 at 141.215 kb on - strand, within GFF835 at 141.215 kb on - strand, within GFF835 at 141.215 kb on - strand, within GFF835 at 141.215 kb on - strand, within GFF835 at 141.215 kb on - strand, within GFF835 at 141.215 kb on - strand, within GFF835 at 141.215 kb on - strand, within GFF835 at 141.216 kb on + strand, within GFF835 at 141.216 kb on + strand, within GFF835 at 141.216 kb on + strand, within GFF835 at 141.216 kb on + strand, within GFF835 at 141.216 kb on + strand, within GFF835 at 141.216 kb on + strand, within GFF835 at 141.216 kb on + strand, within GFF835 at 141.216 kb on + strand, within GFF835 at 141.216 kb on + strand, within GFF835 at 141.216 kb on + strand, within GFF835 at 141.216 kb on + strand, within GFF835 at 141.217 kb on - strand, within GFF835 at 141.217 kb on - strand, within GFF835 at 141.217 kb on - strand, within GFF835 at 141.217 kb on - strand, within GFF835 at 141.217 kb on - strand, within GFF835 at 141.217 kb on - strand, within GFF835 at 141.217 kb on - strand, within GFF835 at 141.217 kb on - strand, within GFF835 at 141.217 kb on - strand, within GFF835 at 141.217 kb on - strand, within GFF835 at 141.217 kb on - strand, within GFF835 at 141.217 kb on - strand, within GFF835 at 141.217 kb on - strand, within GFF835 at 141.217 kb on - strand, within GFF835 at 141.217 kb on - strand, within GFF835 at 141.217 kb on - strand, within GFF835 at 141.217 kb on - strand, within GFF835 at 141.217 kb on - strand, within GFF835 at 141.231 kb on + strand, within GFF835 at 141.231 kb on + strand, within GFF835 at 141.231 kb on + strand, within GFF835 at 141.231 kb on + strand, within GFF835 at 141.231 kb on + strand, within GFF835 at 141.232 kb on - strand, within GFF835 at 141.258 kb on + strand, within GFF835 at 141.258 kb on + strand, within GFF835 at 141.258 kb on + strand, within GFF835 at 141.503 kb on + strand, within GFF835 at 141.503 kb on + strand, within GFF835 at 141.504 kb on - strand at 141.504 kb on - strand at 141.504 kb on - strand at 141.594 kb on + strand at 141.594 kb on + strand at 141.594 kb on + strand at 141.594 kb on + strand at 141.594 kb on + strand at 141.595 kb on - strand at 141.595 kb on - strand at 141.595 kb on - strand at 141.595 kb on - strand at 141.595 kb on - strand at 141.595 kb on - strand at 141.595 kb on - strand at 141.983 kb on + strand, within GFF836 at 141.984 kb on - strand, within GFF836 at 142.605 kb on + strand at 142.605 kb on + strand at 142.605 kb on + strand at 142.606 kb on - strand at 142.758 kb on + strand, within GFF837 at 142.758 kb on + strand, within GFF837 at 142.759 kb on - strand, within GFF837 at 142.759 kb on - strand, within GFF837 at 142.782 kb on + strand, within GFF837 at 142.782 kb on + strand, within GFF837 at 143.278 kb on - strand, within GFF837 at 143.319 kb on + strand, within GFF837 at 143.319 kb on + strand, within GFF837 at 143.319 kb on + strand, within GFF837 at 143.319 kb on + strand, within GFF837 at 143.320 kb on - strand, within GFF837 at 143.361 kb on + strand, within GFF837 at 143.361 kb on + strand, within GFF837 at 143.361 kb on + strand, within GFF837 at 143.361 kb on + strand, within GFF837 at 143.362 kb on - strand, within GFF837 at 143.362 kb on - strand, within GFF837 at 143.362 kb on - strand, within GFF837 at 143.495 kb on + strand at 143.496 kb on - strand at 143.525 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 140,843 + GFF835 0.38 -0.6 140,843 + GFF835 0.38 -1.1 140,844 - GFF835 0.38 -0.0 140,844 - GFF835 0.38 +0.1 140,844 - GFF835 0.38 -2.5 140,844 - GFF835 0.38 -0.6 141,180 + GFF835 0.65 -1.1 141,181 - GFF835 0.65 -1.4 141,181 - GFF835 0.65 +2.5 141,214 + GFF835 0.67 +0.1 141,214 + GFF835 0.67 -1.3 141,214 + GFF835 0.67 -0.0 141,214 + GFF835 0.67 +0.2 141,215 - GFF835 0.67 -0.2 141,215 - GFF835 0.67 +2.2 141,215 - GFF835 0.67 -0.4 141,215 - GFF835 0.67 -0.1 141,215 - GFF835 0.67 -3.1 141,215 - GFF835 0.67 -1.8 141,215 - GFF835 0.67 -0.1 141,215 - GFF835 0.67 +0.4 141,215 - GFF835 0.67 -2.5 141,215 - GFF835 0.67 -2.9 141,216 + GFF835 0.68 -2.2 141,216 + GFF835 0.68 +0.3 141,216 + GFF835 0.68 -2.4 141,216 + GFF835 0.68 +1.3 141,216 + GFF835 0.68 -2.8 141,216 + GFF835 0.68 -1.0 141,216 + GFF835 0.68 +1.3 141,216 + GFF835 0.68 -2.7 141,216 + GFF835 0.68 -0.6 141,216 + GFF835 0.68 +1.4 141,216 + GFF835 0.68 -0.5 141,217 - GFF835 0.68 -1.2 141,217 - GFF835 0.68 +1.4 141,217 - GFF835 0.68 +1.4 141,217 - GFF835 0.68 -1.3 141,217 - GFF835 0.68 -0.1 141,217 - GFF835 0.68 -2.1 141,217 - GFF835 0.68 -1.8 141,217 - GFF835 0.68 +0.3 141,217 - GFF835 0.68 +2.0 141,217 - GFF835 0.68 -2.7 141,217 - GFF835 0.68 -0.2 141,217 - GFF835 0.68 -2.6 141,217 - GFF835 0.68 +1.7 141,217 - GFF835 0.68 -0.0 141,217 - GFF835 0.68 +1.0 141,217 - GFF835 0.68 -2.3 141,217 - GFF835 0.68 -2.2 141,217 - GFF835 0.68 -0.3 141,231 + GFF835 0.69 +0.1 141,231 + GFF835 0.69 +1.7 141,231 + GFF835 0.69 -1.1 141,231 + GFF835 0.69 +0.6 141,231 + GFF835 0.69 +0.5 141,232 - GFF835 0.69 +1.4 141,258 + GFF835 0.71 -2.0 141,258 + GFF835 0.71 -1.0 141,258 + GFF835 0.71 -1.3 141,503 + GFF835 0.90 -0.4 141,503 + GFF835 0.90 -2.0 141,504 - -2.0 141,504 - +0.2 141,504 - -2.3 141,594 + +0.2 141,594 + -0.8 141,594 + -2.1 141,594 + -2.2 141,594 + +1.2 141,595 - -1.6 141,595 - -0.6 141,595 - +0.3 141,595 - -0.0 141,595 - +1.4 141,595 - -1.6 141,595 - -2.8 141,983 + GFF836 0.38 -1.3 141,984 - GFF836 0.38 -0.7 142,605 + +0.7 142,605 + -3.8 142,605 + -1.3 142,606 - -2.8 142,758 + GFF837 0.18 -0.7 142,758 + GFF837 0.18 -0.6 142,759 - GFF837 0.18 +1.3 142,759 - GFF837 0.18 -0.3 142,782 + GFF837 0.21 -1.1 142,782 + GFF837 0.21 -0.8 143,278 - GFF837 0.79 -1.1 143,319 + GFF837 0.84 -1.2 143,319 + GFF837 0.84 +0.5 143,319 + GFF837 0.84 +0.6 143,319 + GFF837 0.84 +0.9 143,320 - GFF837 0.84 +1.3 143,361 + GFF837 0.89 -2.4 143,361 + GFF837 0.89 -1.3 143,361 + GFF837 0.89 -0.8 143,361 + GFF837 0.89 +1.7 143,362 - GFF837 0.89 -0.7 143,362 - GFF837 0.89 -1.3 143,362 - GFF837 0.89 -2.7 143,495 + +0.2 143,496 - -1.4 143,525 + +3.3
Or see this region's nucleotide sequence