Strain Fitness in Variovorax sp. SCN45 around GFF830

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF829 and GFF830 overlap by 4 nucleotidesGFF830 and GFF831 are separated by 224 nucleotidesGFF831 and GFF832 are separated by 42 nucleotides GFF829 - Aerobic cobaltochelatase CobN subunit (EC 6.6.1.2), at 133,061 to 136,879 GFF829 GFF830 - ChlI component of cobalt chelatase involved in B12 biosynthesis, at 136,876 to 137,943 GFF830 GFF831 - ChlD component of cobalt chelatase involved in B12 biosynthesis, at 138,168 to 138,581 GFF831 GFF832 - hypothetical protein, at 138,624 to 138,956 GFF832 Position (kb) 136 137 138Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 136.187 kb on + strand, within GFF829at 136.188 kb on - strand, within GFF829at 136.188 kb on - strand, within GFF829at 136.188 kb on - strand, within GFF829at 136.256 kb on + strand, within GFF829at 136.256 kb on + strand, within GFF829at 136.257 kb on - strand, within GFF829at 136.257 kb on - strand, within GFF829at 136.257 kb on - strand, within GFF829at 136.280 kb on + strand, within GFF829at 136.400 kb on + strand, within GFF829at 136.401 kb on - strand, within GFF829at 136.401 kb on - strand, within GFF829at 136.401 kb on - strand, within GFF829at 136.401 kb on - strand, within GFF829at 136.401 kb on - strand, within GFF829at 136.401 kb on - strand, within GFF829at 136.403 kb on + strand, within GFF829at 136.403 kb on + strand, within GFF829at 136.403 kb on + strand, within GFF829at 136.403 kb on + strand, within GFF829at 136.404 kb on - strand, within GFF829at 136.404 kb on - strand, within GFF829at 136.404 kb on - strand, within GFF829at 136.404 kb on - strand, within GFF829at 136.466 kb on + strand, within GFF829at 136.466 kb on + strand, within GFF829at 136.466 kb on + strand, within GFF829at 136.466 kb on + strand, within GFF829at 136.466 kb on + strand, within GFF829at 136.466 kb on + strand, within GFF829at 136.466 kb on + strand, within GFF829at 136.466 kb on + strand, within GFF829at 136.466 kb on + strand, within GFF829at 136.467 kb on - strand, within GFF829at 136.467 kb on - strand, within GFF829at 136.467 kb on - strand, within GFF829at 136.467 kb on - strand, within GFF829at 136.467 kb on - strand, within GFF829at 136.467 kb on - strand, within GFF829at 136.467 kb on - strand, within GFF829at 136.467 kb on - strand, within GFF829at 136.589 kb on + strandat 136.589 kb on + strandat 136.590 kb on - strandat 136.625 kb on + strandat 136.625 kb on + strandat 136.673 kb on + strandat 136.674 kb on - strandat 136.694 kb on + strandat 136.694 kb on + strandat 136.695 kb on - strandat 136.695 kb on - strandat 136.695 kb on - strandat 136.695 kb on - strandat 136.815 kb on - strandat 136.909 kb on - strandat 137.194 kb on + strand, within GFF830at 137.194 kb on + strand, within GFF830at 137.194 kb on + strand, within GFF830at 137.195 kb on - strand, within GFF830at 137.195 kb on - strand, within GFF830at 137.195 kb on - strand, within GFF830at 137.560 kb on + strand, within GFF830at 137.560 kb on + strand, within GFF830at 138.231 kb on + strand, within GFF831at 138.231 kb on + strand, within GFF831at 138.231 kb on + strand, within GFF831at 138.231 kb on + strand, within GFF831at 138.232 kb on - strand, within GFF831at 138.568 kb on - strandat 138.579 kb on + strandat 138.580 kb on - strandat 138.614 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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136,187 + GFF829 0.82 -2.7
136,188 - GFF829 0.82 +0.7
136,188 - GFF829 0.82 -2.4
136,188 - GFF829 0.82 +0.8
136,256 + GFF829 0.84 -1.8
136,256 + GFF829 0.84 -1.8
136,257 - GFF829 0.84 -1.3
136,257 - GFF829 0.84 -0.3
136,257 - GFF829 0.84 -0.3
136,280 + GFF829 0.84 -1.1
136,400 + GFF829 0.87 -2.4
136,401 - GFF829 0.87 -1.1
136,401 - GFF829 0.87 -2.9
136,401 - GFF829 0.87 -1.1
136,401 - GFF829 0.87 -0.2
136,401 - GFF829 0.87 +0.2
136,401 - GFF829 0.87 -0.4
136,403 + GFF829 0.88 -1.4
136,403 + GFF829 0.88 -2.0
136,403 + GFF829 0.88 +0.9
136,403 + GFF829 0.88 +0.4
136,404 - GFF829 0.88 -1.4
136,404 - GFF829 0.88 -0.8
136,404 - GFF829 0.88 -0.3
136,404 - GFF829 0.88 +0.1
136,466 + GFF829 0.89 +0.9
136,466 + GFF829 0.89 -1.1
136,466 + GFF829 0.89 +1.3
136,466 + GFF829 0.89 -0.6
136,466 + GFF829 0.89 +1.3
136,466 + GFF829 0.89 -1.5
136,466 + GFF829 0.89 +0.4
136,466 + GFF829 0.89 -0.4
136,466 + GFF829 0.89 -4.1
136,467 - GFF829 0.89 -1.4
136,467 - GFF829 0.89 -1.4
136,467 - GFF829 0.89 -0.5
136,467 - GFF829 0.89 -2.2
136,467 - GFF829 0.89 -2.7
136,467 - GFF829 0.89 -1.6
136,467 - GFF829 0.89 -1.5
136,467 - GFF829 0.89 -3.2
136,589 + -2.4
136,589 + -3.6
136,590 - -0.6
136,625 + -0.4
136,625 + -0.9
136,673 + +0.4
136,674 - -0.8
136,694 + -0.6
136,694 + -1.4
136,695 - -0.3
136,695 - -1.5
136,695 - -1.1
136,695 - +0.2
136,815 - -0.3
136,909 - -1.3
137,194 + GFF830 0.30 +1.1
137,194 + GFF830 0.30 -0.6
137,194 + GFF830 0.30 -0.6
137,195 - GFF830 0.30 -2.5
137,195 - GFF830 0.30 -2.4
137,195 - GFF830 0.30 -1.3
137,560 + GFF830 0.64 -1.7
137,560 + GFF830 0.64 +0.0
138,231 + GFF831 0.15 +0.9
138,231 + GFF831 0.15 -2.5
138,231 + GFF831 0.15 -1.6
138,231 + GFF831 0.15 +0.7
138,232 - GFF831 0.15 -2.4
138,568 - -2.4
138,579 + -3.5
138,580 - -1.1
138,614 - -1.6

Or see this region's nucleotide sequence