Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF783 and GFF784 are separated by 11 nucleotides GFF784 and GFF785 are separated by 5 nucleotides GFF785 and GFF786 are separated by 219 nucleotides
GFF783 - no description, at 65,347 to 66,069
GFF783
GFF784 - KEGG: RNA polymerase sigma-70 factor, ECF subfamily, at 66,081 to 66,641
GFF784
GFF785 - Sigma factor regulator VreR (cytoplasmic membrane-localized) of trans-envelope signaling system, at 66,647 to 67,636
GFF785
GFF786 - Filamentous haemagglutinin family outer membrane protein associated with VreARI signalling system, at 67,856 to 80,332
GFF786
Position (kb) 66
67
68 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 65.656 kb on + strand, within GFF783 at 66.132 kb on + strand at 66.132 kb on + strand at 66.132 kb on + strand at 66.132 kb on + strand at 66.133 kb on - strand at 66.261 kb on + strand, within GFF784 at 66.261 kb on + strand, within GFF784 at 66.631 kb on + strand at 66.631 kb on + strand at 66.631 kb on + strand at 66.632 kb on - strand at 66.634 kb on + strand at 66.789 kb on + strand, within GFF785 at 66.790 kb on - strand, within GFF785 at 66.917 kb on + strand, within GFF785 at 67.017 kb on - strand, within GFF785 at 67.171 kb on + strand, within GFF785 at 67.307 kb on + strand, within GFF785 at 67.352 kb on + strand, within GFF785 at 67.352 kb on + strand, within GFF785 at 67.586 kb on + strand at 67.785 kb on - strand at 68.015 kb on + strand at 68.560 kb on + strand at 68.594 kb on + strand at 68.594 kb on + strand at 68.595 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 65,656 + GFF783 0.43 +1.4 66,132 + -1.7 66,132 + -0.4 66,132 + -0.6 66,132 + +0.1 66,133 - -1.6 66,261 + GFF784 0.32 +1.7 66,261 + GFF784 0.32 +0.7 66,631 + -2.1 66,631 + -2.5 66,631 + -1.7 66,632 - -2.0 66,634 + -2.4 66,789 + GFF785 0.14 -0.0 66,790 - GFF785 0.14 -1.8 66,917 + GFF785 0.27 +2.0 67,017 - GFF785 0.37 -0.8 67,171 + GFF785 0.53 +0.4 67,307 + GFF785 0.67 -0.8 67,352 + GFF785 0.71 -0.6 67,352 + GFF785 0.71 -3.7 67,586 + -0.7 67,785 - +1.3 68,015 + -0.3 68,560 + +0.4 68,594 + -1.4 68,594 + -0.6 68,595 - +0.3
Or see this region's nucleotide sequence