Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF754 and GFF755 are separated by 147 nucleotides GFF755 and GFF756 overlap by 4 nucleotides GFF756 and GFF757 overlap by 4 nucleotides GFF757 and GFF758 are separated by 9 nucleotides
GFF754 - FIG00975093: hypothetical protein, at 17,689 to 18,522
GFF754
GFF755 - Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB, at 18,670 to 20,568
GFF755
GFF756 - no description, at 20,565 to 20,711
GFF756
GFF757 - hypothetical protein, at 20,708 to 21,535
GFF757
GFF758 - 2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase (EC 2.5.1.55), at 21,545 to 22,390
GFF758
Position (kb) 18
19
20
21 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 17.881 kb on + strand, within GFF754 at 17.881 kb on + strand, within GFF754 at 17.882 kb on - strand, within GFF754 at 18.000 kb on - strand, within GFF754 at 18.194 kb on + strand, within GFF754 at 18.194 kb on + strand, within GFF754 at 18.195 kb on - strand, within GFF754 at 18.195 kb on - strand, within GFF754 at 18.281 kb on + strand, within GFF754 at 18.281 kb on + strand, within GFF754 at 18.281 kb on + strand, within GFF754 at 18.323 kb on + strand, within GFF754 at 18.324 kb on - strand, within GFF754 at 18.330 kb on - strand, within GFF754 at 18.365 kb on + strand, within GFF754 at 18.365 kb on + strand, within GFF754 at 18.365 kb on + strand, within GFF754 at 18.365 kb on + strand, within GFF754 at 18.366 kb on - strand, within GFF754 at 18.366 kb on - strand, within GFF754 at 18.366 kb on - strand, within GFF754 at 18.366 kb on - strand, within GFF754 at 18.366 kb on - strand, within GFF754 at 18.366 kb on - strand, within GFF754 at 18.618 kb on + strand at 18.618 kb on + strand at 18.618 kb on + strand at 18.618 kb on + strand at 18.619 kb on - strand at 18.619 kb on - strand at 18.619 kb on - strand at 18.619 kb on - strand at 18.619 kb on - strand at 18.619 kb on - strand at 18.619 kb on - strand at 18.619 kb on - strand at 18.662 kb on + strand at 18.662 kb on + strand at 18.662 kb on + strand at 18.663 kb on - strand at 18.663 kb on - strand at 18.663 kb on - strand at 19.156 kb on + strand, within GFF755 at 19.450 kb on + strand, within GFF755 at 19.450 kb on + strand, within GFF755 at 19.450 kb on + strand, within GFF755 at 19.450 kb on + strand, within GFF755 at 19.450 kb on + strand, within GFF755 at 19.451 kb on - strand, within GFF755 at 19.451 kb on - strand, within GFF755 at 19.456 kb on + strand, within GFF755 at 19.456 kb on + strand, within GFF755 at 19.457 kb on - strand, within GFF755 at 19.457 kb on - strand, within GFF755 at 19.457 kb on - strand, within GFF755 at 19.457 kb on - strand, within GFF755 at 19.457 kb on - strand, within GFF755 at 19.457 kb on - strand, within GFF755 at 19.457 kb on - strand, within GFF755 at 19.466 kb on + strand, within GFF755 at 19.477 kb on + strand, within GFF755 at 19.478 kb on - strand, within GFF755 at 19.573 kb on + strand, within GFF755 at 19.573 kb on + strand, within GFF755 at 19.835 kb on + strand, within GFF755 at 19.835 kb on + strand, within GFF755 at 19.835 kb on + strand, within GFF755 at 19.835 kb on + strand, within GFF755 at 19.836 kb on - strand, within GFF755 at 19.836 kb on - strand, within GFF755 at 19.836 kb on - strand, within GFF755 at 20.224 kb on + strand, within GFF755 at 20.224 kb on + strand, within GFF755 at 20.225 kb on - strand, within GFF755 at 20.225 kb on - strand, within GFF755 at 20.302 kb on + strand, within GFF755 at 20.329 kb on + strand, within GFF755 at 20.329 kb on + strand, within GFF755 at 20.329 kb on + strand, within GFF755 at 20.330 kb on - strand, within GFF755 at 20.330 kb on - strand, within GFF755 at 20.330 kb on - strand, within GFF755 at 20.656 kb on - strand, within GFF756 at 20.656 kb on - strand, within GFF756 at 20.677 kb on + strand, within GFF756 at 20.677 kb on + strand, within GFF756 at 20.677 kb on + strand, within GFF756 at 20.677 kb on + strand, within GFF756 at 20.677 kb on + strand, within GFF756 at 20.677 kb on + strand, within GFF756 at 20.677 kb on + strand, within GFF756 at 20.677 kb on + strand, within GFF756 at 20.677 kb on + strand, within GFF756 at 20.677 kb on + strand, within GFF756 at 20.677 kb on + strand, within GFF756 at 20.677 kb on + strand, within GFF756 at 20.677 kb on + strand, within GFF756 at 20.677 kb on + strand, within GFF756 at 20.677 kb on + strand, within GFF756 at 20.678 kb on - strand, within GFF756 at 20.678 kb on - strand, within GFF756 at 20.678 kb on - strand, within GFF756 at 20.678 kb on - strand, within GFF756 at 20.678 kb on - strand, within GFF756 at 20.678 kb on - strand, within GFF756 at 20.678 kb on - strand, within GFF756 at 20.678 kb on - strand, within GFF756 at 20.678 kb on - strand, within GFF756 at 20.678 kb on - strand, within GFF756 at 20.678 kb on - strand, within GFF756 at 20.681 kb on + strand, within GFF756 at 20.681 kb on + strand, within GFF756 at 20.681 kb on + strand, within GFF756 at 20.681 kb on + strand, within GFF756 at 20.681 kb on + strand, within GFF756 at 20.681 kb on + strand, within GFF756 at 20.681 kb on + strand, within GFF756 at 20.681 kb on + strand, within GFF756 at 20.681 kb on + strand, within GFF756 at 20.682 kb on - strand, within GFF756 at 20.682 kb on - strand, within GFF756 at 20.682 kb on - strand, within GFF756 at 20.682 kb on - strand, within GFF756 at 20.682 kb on - strand, within GFF756 at 20.682 kb on - strand, within GFF756 at 20.682 kb on - strand, within GFF756 at 20.682 kb on - strand, within GFF756 at 20.682 kb on - strand, within GFF756 at 20.682 kb on - strand, within GFF756 at 20.682 kb on - strand, within GFF756 at 20.682 kb on - strand, within GFF756 at 20.778 kb on + strand at 20.778 kb on + strand at 20.778 kb on + strand at 20.778 kb on + strand at 20.779 kb on - strand at 20.779 kb on - strand at 20.779 kb on - strand at 20.779 kb on - strand at 20.779 kb on - strand at 20.779 kb on - strand at 20.779 kb on - strand at 21.059 kb on + strand, within GFF757 at 21.059 kb on + strand, within GFF757 at 21.059 kb on + strand, within GFF757 at 21.059 kb on + strand, within GFF757 at 21.059 kb on + strand, within GFF757 at 21.060 kb on - strand, within GFF757 at 21.060 kb on - strand, within GFF757 at 21.236 kb on + strand, within GFF757 at 21.550 kb on + strand at 21.550 kb on + strand at 21.550 kb on + strand at 21.551 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 17,881 + GFF754 0.23 -0.9 17,881 + GFF754 0.23 -1.1 17,882 - GFF754 0.23 -0.2 18,000 - GFF754 0.37 -2.3 18,194 + GFF754 0.61 -1.8 18,194 + GFF754 0.61 -2.4 18,195 - GFF754 0.61 +0.6 18,195 - GFF754 0.61 -0.2 18,281 + GFF754 0.71 -0.1 18,281 + GFF754 0.71 -2.2 18,281 + GFF754 0.71 -2.8 18,323 + GFF754 0.76 -2.7 18,324 - GFF754 0.76 -0.9 18,330 - GFF754 0.77 -4.2 18,365 + GFF754 0.81 -1.6 18,365 + GFF754 0.81 -0.6 18,365 + GFF754 0.81 -0.6 18,365 + GFF754 0.81 -1.8 18,366 - GFF754 0.81 +1.0 18,366 - GFF754 0.81 -1.7 18,366 - GFF754 0.81 -2.4 18,366 - GFF754 0.81 -0.1 18,366 - GFF754 0.81 +0.0 18,366 - GFF754 0.81 +0.5 18,618 + -0.6 18,618 + -0.2 18,618 + -0.3 18,618 + +1.3 18,619 - -1.1 18,619 - -0.8 18,619 - -0.6 18,619 - -0.7 18,619 - +0.2 18,619 - -0.8 18,619 - -1.6 18,619 - -1.1 18,662 + -1.0 18,662 + -2.7 18,662 + +2.2 18,663 - +0.3 18,663 - -2.5 18,663 - -3.0 19,156 + GFF755 0.26 -2.7 19,450 + GFF755 0.41 +0.6 19,450 + GFF755 0.41 -3.5 19,450 + GFF755 0.41 -1.3 19,450 + GFF755 0.41 +0.3 19,450 + GFF755 0.41 -1.8 19,451 - GFF755 0.41 +0.9 19,451 - GFF755 0.41 -0.1 19,456 + GFF755 0.41 +3.1 19,456 + GFF755 0.41 -1.8 19,457 - GFF755 0.41 +0.5 19,457 - GFF755 0.41 -0.5 19,457 - GFF755 0.41 +0.8 19,457 - GFF755 0.41 +0.5 19,457 - GFF755 0.41 +1.7 19,457 - GFF755 0.41 -2.3 19,457 - GFF755 0.41 -2.9 19,466 + GFF755 0.42 -0.4 19,477 + GFF755 0.42 +2.2 19,478 - GFF755 0.43 +0.1 19,573 + GFF755 0.48 +0.4 19,573 + GFF755 0.48 -1.2 19,835 + GFF755 0.61 -2.2 19,835 + GFF755 0.61 -1.9 19,835 + GFF755 0.61 -1.3 19,835 + GFF755 0.61 +0.8 19,836 - GFF755 0.61 +0.2 19,836 - GFF755 0.61 -1.7 19,836 - GFF755 0.61 -0.1 20,224 + GFF755 0.82 +0.2 20,224 + GFF755 0.82 -0.7 20,225 - GFF755 0.82 -0.0 20,225 - GFF755 0.82 +1.0 20,302 + GFF755 0.86 +0.2 20,329 + GFF755 0.87 -1.0 20,329 + GFF755 0.87 -1.6 20,329 + GFF755 0.87 +0.6 20,330 - GFF755 0.87 +1.7 20,330 - GFF755 0.87 +2.3 20,330 - GFF755 0.87 +0.1 20,656 - GFF756 0.62 +0.7 20,656 - GFF756 0.62 +0.5 20,677 + GFF756 0.76 -2.6 20,677 + GFF756 0.76 +1.3 20,677 + GFF756 0.76 -1.4 20,677 + GFF756 0.76 -1.3 20,677 + GFF756 0.76 +0.1 20,677 + GFF756 0.76 -0.8 20,677 + GFF756 0.76 +0.2 20,677 + GFF756 0.76 -1.4 20,677 + GFF756 0.76 +1.4 20,677 + GFF756 0.76 -1.6 20,677 + GFF756 0.76 +1.9 20,677 + GFF756 0.76 +1.1 20,677 + GFF756 0.76 -1.3 20,677 + GFF756 0.76 -1.0 20,677 + GFF756 0.76 -2.4 20,678 - GFF756 0.77 -1.2 20,678 - GFF756 0.77 -1.8 20,678 - GFF756 0.77 -0.6 20,678 - GFF756 0.77 -0.8 20,678 - GFF756 0.77 -1.1 20,678 - GFF756 0.77 -0.9 20,678 - GFF756 0.77 +0.7 20,678 - GFF756 0.77 +0.7 20,678 - GFF756 0.77 +2.0 20,678 - GFF756 0.77 -0.2 20,678 - GFF756 0.77 -0.1 20,681 + GFF756 0.79 -0.7 20,681 + GFF756 0.79 -1.7 20,681 + GFF756 0.79 -0.1 20,681 + GFF756 0.79 -0.1 20,681 + GFF756 0.79 +0.7 20,681 + GFF756 0.79 +0.9 20,681 + GFF756 0.79 +0.2 20,681 + GFF756 0.79 -0.1 20,681 + GFF756 0.79 -0.6 20,682 - GFF756 0.80 -0.5 20,682 - GFF756 0.80 -0.3 20,682 - GFF756 0.80 -0.3 20,682 - GFF756 0.80 +0.9 20,682 - GFF756 0.80 -1.4 20,682 - GFF756 0.80 +0.2 20,682 - GFF756 0.80 -0.0 20,682 - GFF756 0.80 +0.2 20,682 - GFF756 0.80 +0.8 20,682 - GFF756 0.80 -2.7 20,682 - GFF756 0.80 -0.3 20,682 - GFF756 0.80 -2.0 20,778 + +1.6 20,778 + +0.1 20,778 + -2.9 20,778 + +2.2 20,779 - -1.4 20,779 - -1.6 20,779 - -0.3 20,779 - -1.0 20,779 - -2.2 20,779 - +2.2 20,779 - -1.1 21,059 + GFF757 0.42 +0.0 21,059 + GFF757 0.42 -3.4 21,059 + GFF757 0.42 -0.6 21,059 + GFF757 0.42 +0.0 21,059 + GFF757 0.42 +0.5 21,060 - GFF757 0.43 +0.7 21,060 - GFF757 0.43 +0.1 21,236 + GFF757 0.64 +0.1 21,550 + -0.3 21,550 + -2.1 21,550 + +3.0 21,551 - -2.1
Or see this region's nucleotide sequence