Strain Fitness in Variovorax sp. SCN45 around GFF735

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF734 and GFF735 are separated by 520 nucleotides GFF734 - no description, at 790,572 to 791,159 GFF734 GFF735 - no description, at 791,680 to 791,925 GFF735 Position (kb) 791 792Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 790.701 kb on + strand, within GFF734at 790.701 kb on + strand, within GFF734at 790.701 kb on + strand, within GFF734at 790.702 kb on - strand, within GFF734at 790.702 kb on - strand, within GFF734at 790.707 kb on + strand, within GFF734at 790.707 kb on + strand, within GFF734at 790.707 kb on + strand, within GFF734at 790.707 kb on + strand, within GFF734at 790.707 kb on + strand, within GFF734at 790.708 kb on - strand, within GFF734at 790.708 kb on - strand, within GFF734at 790.708 kb on - strand, within GFF734at 790.708 kb on - strand, within GFF734at 790.708 kb on - strand, within GFF734at 790.790 kb on - strand, within GFF734at 790.790 kb on - strand, within GFF734at 790.831 kb on - strand, within GFF734at 790.923 kb on + strand, within GFF734at 790.924 kb on - strand, within GFF734at 790.924 kb on - strand, within GFF734at 790.940 kb on + strand, within GFF734at 790.940 kb on + strand, within GFF734at 790.940 kb on + strand, within GFF734at 790.941 kb on - strand, within GFF734at 790.948 kb on - strand, within GFF734at 790.948 kb on - strand, within GFF734at 790.960 kb on - strand, within GFF734at 790.960 kb on - strand, within GFF734at 791.032 kb on + strand, within GFF734at 791.032 kb on + strand, within GFF734at 791.033 kb on - strand, within GFF734at 791.033 kb on - strand, within GFF734at 791.151 kb on + strandat 791.152 kb on - strandat 791.158 kb on - strandat 791.202 kb on - strandat 791.202 kb on - strandat 791.202 kb on - strandat 791.261 kb on + strandat 791.261 kb on + strandat 791.261 kb on + strandat 791.262 kb on - strandat 791.284 kb on + strandat 791.285 kb on - strandat 791.328 kb on - strandat 791.386 kb on + strandat 791.386 kb on + strandat 791.387 kb on - strandat 791.463 kb on - strandat 791.473 kb on + strandat 791.474 kb on - strandat 791.485 kb on + strandat 791.485 kb on + strandat 791.486 kb on - strandat 791.493 kb on + strandat 791.493 kb on + strandat 791.493 kb on + strandat 791.494 kb on - strandat 791.504 kb on + strandat 791.505 kb on - strandat 791.527 kb on - strandat 791.527 kb on - strandat 791.527 kb on - strandat 791.571 kb on + strandat 791.571 kb on + strandat 791.571 kb on + strandat 791.571 kb on + strandat 791.711 kb on + strand, within GFF735at 791.797 kb on + strand, within GFF735at 791.797 kb on + strand, within GFF735at 791.797 kb on + strand, within GFF735at 791.797 kb on + strand, within GFF735at 791.797 kb on + strand, within GFF735at 791.798 kb on - strand, within GFF735at 791.798 kb on - strand, within GFF735at 791.884 kb on + strand, within GFF735at 791.884 kb on + strand, within GFF735at 791.884 kb on + strand, within GFF735at 791.885 kb on - strand, within GFF735at 791.885 kb on - strand, within GFF735at 791.885 kb on - strand, within GFF735at 791.885 kb on - strand, within GFF735at 791.890 kb on + strand, within GFF735at 791.890 kb on + strand, within GFF735at 791.890 kb on + strand, within GFF735at 791.892 kb on + strand, within GFF735at 791.892 kb on + strand, within GFF735at 791.893 kb on - strand, within GFF735at 791.929 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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790,701 + GFF734 0.22 -0.4
790,701 + GFF734 0.22 +2.1
790,701 + GFF734 0.22 +0.5
790,702 - GFF734 0.22 -1.9
790,702 - GFF734 0.22 -1.6
790,707 + GFF734 0.23 +2.6
790,707 + GFF734 0.23 +0.5
790,707 + GFF734 0.23 +0.3
790,707 + GFF734 0.23 -0.3
790,707 + GFF734 0.23 +0.8
790,708 - GFF734 0.23 +1.8
790,708 - GFF734 0.23 -0.4
790,708 - GFF734 0.23 +1.1
790,708 - GFF734 0.23 -2.8
790,708 - GFF734 0.23 -1.0
790,790 - GFF734 0.37 -2.5
790,790 - GFF734 0.37 -1.9
790,831 - GFF734 0.44 -0.3
790,923 + GFF734 0.60 -1.9
790,924 - GFF734 0.60 +1.0
790,924 - GFF734 0.60 -2.1
790,940 + GFF734 0.63 -0.0
790,940 + GFF734 0.63 -2.2
790,940 + GFF734 0.63 -0.3
790,941 - GFF734 0.63 -0.3
790,948 - GFF734 0.64 +0.4
790,948 - GFF734 0.64 -2.4
790,960 - GFF734 0.66 -0.0
790,960 - GFF734 0.66 -0.0
791,032 + GFF734 0.78 -0.4
791,032 + GFF734 0.78 +0.4
791,033 - GFF734 0.78 -3.7
791,033 - GFF734 0.78 -2.8
791,151 + +1.2
791,152 - +1.0
791,158 - +1.7
791,202 - +2.0
791,202 - -0.4
791,202 - -0.2
791,261 + -1.5
791,261 + -0.4
791,261 + +2.5
791,262 - -0.3
791,284 + -1.4
791,285 - -1.2
791,328 - -1.0
791,386 + -0.3
791,386 + -0.0
791,387 - +1.4
791,463 - -0.6
791,473 + -1.6
791,474 - -1.8
791,485 + -1.2
791,485 + -2.0
791,486 - -0.4
791,493 + -0.2
791,493 + +2.3
791,493 + -2.2
791,494 - -0.0
791,504 + +2.1
791,505 - -1.0
791,527 - -1.0
791,527 - -3.5
791,527 - -1.4
791,571 + -1.4
791,571 + -1.0
791,571 + +0.3
791,571 + +0.2
791,711 + GFF735 0.13 +1.4
791,797 + GFF735 0.48 -1.7
791,797 + GFF735 0.48 -1.0
791,797 + GFF735 0.48 -1.6
791,797 + GFF735 0.48 -0.8
791,797 + GFF735 0.48 -1.4
791,798 - GFF735 0.48 -0.1
791,798 - GFF735 0.48 -2.9
791,884 + GFF735 0.83 -1.6
791,884 + GFF735 0.83 -2.1
791,884 + GFF735 0.83 -0.4
791,885 - GFF735 0.83 -0.4
791,885 - GFF735 0.83 -0.7
791,885 - GFF735 0.83 -0.2
791,885 - GFF735 0.83 -0.0
791,890 + GFF735 0.85 -0.4
791,890 + GFF735 0.85 +1.6
791,890 + GFF735 0.85 +1.0
791,892 + GFF735 0.86 -0.7
791,892 + GFF735 0.86 +1.2
791,893 - GFF735 0.87 -2.4
791,929 - -2.5

Or see this region's nucleotide sequence