Strain Fitness in Variovorax sp. SCN45 around GFF7290

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
7,673	-				-1.3
7,729	-				-0.4
8,477	+		GFF7289	0.79	-0.5
8,477	+		GFF7289	0.79	+1.5
8,478	-		GFF7289	0.79	+1.1
8,577	-				+1.4
8,658	-				-1.7
8,731	+		GFF7290	0.14	+1.1
8,731	+		GFF7290	0.14	+0.4
8,731	+		GFF7290	0.14	-1.1
8,732	-		GFF7290	0.14	-2.2
8,858	-		GFF7290	0.31	-3.5
9,256	+		GFF7290	0.84	+0.4
9,256	+		GFF7290	0.84	-0.9
9,256	+		GFF7290	0.84	-0.5
9,256	+		GFF7290	0.84	-0.4
9,256	+		GFF7290	0.84	+0.8
9,256	+		GFF7290	0.84	+1.4
9,256	+		GFF7290	0.84	+1.0
9,256	+		GFF7290	0.84	-0.1
9,256	+		GFF7290	0.84	-2.1
9,256	+		GFF7290	0.84	-1.9
9,256	+		GFF7290	0.84	-3.3
9,256	+		GFF7290	0.84	+1.5
9,256	+		GFF7290	0.84	-1.7
9,256	+		GFF7290	0.84	-0.2
9,257	-		GFF7290	0.84	-2.8
9,257	-		GFF7290	0.84	+0.1
9,257	-		GFF7290	0.84	-1.2
9,257	-		GFF7290	0.84	+0.5
9,257	-		GFF7290	0.84	+3.0
9,257	-		GFF7290	0.84	+0.1
9,257	-		GFF7290	0.84	-1.6
9,257	-		GFF7290	0.84	+1.5
9,257	-		GFF7290	0.84	+2.4
9,257	-		GFF7290	0.84	+1.5
9,257	-		GFF7290	0.84	-0.3
9,257	-		GFF7290	0.84	-1.7
9,257	-		GFF7290	0.84	+4.0
9,257	-		GFF7290	0.84	+0.3
9,257	-		GFF7290	0.84	+0.9
9,257	-		GFF7290	0.84	-1.2
9,418	+				-1.4
9,418	+				-0.1
9,418	+				+0.9
9,418	+				+1.4
9,419	-				-0.9
9,474	+				-0.8
9,474	+				-1.3
9,474	+				-0.6
9,474	+				-1.8
9,474	+				-1.2
9,475	-				+2.2
9,475	-				-1.3
9,520	-				+0.8
9,525	+				-1.1
9,573	+		GFF7291	0.13	-1.4
9,573	+		GFF7291	0.13	-0.3
9,573	+		GFF7291	0.13	+1.1
9,573	+		GFF7291	0.13	-1.3
9,573	+		GFF7291	0.13	-0.3
9,573	+		GFF7291	0.13	-0.6
9,948	+		GFF7291	0.51	-0.4
9,948	+		GFF7291	0.51	-1.5
9,948	+		GFF7291	0.51	-0.8
9,948	+		GFF7291	0.51	-0.6
9,949	-		GFF7291	0.51	+2.4
10,290	+		GFF7291	0.86	-0.8
10,290	+		GFF7291	0.86	-2.0
10,291	-		GFF7291	0.86	+0.8
10,291	-		GFF7291	0.86	-1.1
10,291	-		GFF7291	0.86	+1.4
10,293	+		GFF7291	0.86	+1.4
10,293	+		GFF7291	0.86	+1.8
10,293	+		GFF7291	0.86	-0.2
10,293	+		GFF7291	0.86	+1.1
10,294	-		GFF7291	0.86	-2.0
10,294	-		GFF7291	0.86	-1.9
10,294	-		GFF7291	0.86	-2.8