Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7234 and GFF7235 overlap by 4 nucleotides GFF7235 and GFF7236 are separated by 17 nucleotides
GFF7234 - Cyclopropane-fatty-acyl-phospholipid synthase (EC 2.1.1.79), at 14,557 to 15,783
GFF7234
GFF7235 - FAD/FMN-containing dehydrogenase Mvan_5531, at 15,780 to 17,141
GFF7235
GFF7236 - Universal stress protein UspA and related nucleotide-binding proteins, at 17,159 to 18,106
GFF7236
Position (kb) 15
16
17
18 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 14.980 kb on + strand, within GFF7234 at 14.980 kb on + strand, within GFF7234 at 14.980 kb on + strand, within GFF7234 at 14.980 kb on + strand, within GFF7234 at 14.980 kb on + strand, within GFF7234 at 14.980 kb on + strand, within GFF7234 at 14.980 kb on + strand, within GFF7234 at 14.981 kb on - strand, within GFF7234 at 14.981 kb on - strand, within GFF7234 at 14.981 kb on - strand, within GFF7234 at 14.981 kb on - strand, within GFF7234 at 14.981 kb on - strand, within GFF7234 at 14.981 kb on - strand, within GFF7234 at 15.272 kb on - strand, within GFF7234 at 15.272 kb on - strand, within GFF7234 at 15.272 kb on - strand, within GFF7234 at 15.646 kb on + strand, within GFF7234 at 15.647 kb on - strand, within GFF7234 at 15.647 kb on - strand, within GFF7234 at 15.647 kb on - strand, within GFF7234 at 15.647 kb on - strand, within GFF7234 at 15.766 kb on + strand at 15.767 kb on - strand at 15.767 kb on - strand at 16.014 kb on + strand, within GFF7235 at 16.015 kb on - strand, within GFF7235 at 16.254 kb on + strand, within GFF7235 at 16.255 kb on - strand, within GFF7235 at 16.269 kb on + strand, within GFF7235 at 16.479 kb on + strand, within GFF7235 at 16.497 kb on + strand, within GFF7235 at 16.497 kb on + strand, within GFF7235 at 16.497 kb on + strand, within GFF7235 at 16.497 kb on + strand, within GFF7235 at 16.497 kb on + strand, within GFF7235 at 16.498 kb on - strand, within GFF7235 at 16.498 kb on - strand, within GFF7235 at 16.548 kb on + strand, within GFF7235 at 16.549 kb on - strand, within GFF7235 at 16.657 kb on - strand, within GFF7235 at 16.657 kb on - strand, within GFF7235 at 16.870 kb on - strand, within GFF7235 at 16.893 kb on + strand, within GFF7235 at 16.893 kb on + strand, within GFF7235 at 16.893 kb on + strand, within GFF7235 at 16.893 kb on + strand, within GFF7235 at 17.019 kb on + strand at 17.019 kb on + strand at 17.019 kb on + strand at 17.019 kb on + strand at 17.019 kb on + strand at 17.055 kb on - strand at 17.128 kb on + strand at 17.583 kb on - strand, within GFF7236 at 18.014 kb on + strand at 18.066 kb on + strand at 18.067 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 14,980 + GFF7234 0.34 -0.8 14,980 + GFF7234 0.34 -0.4 14,980 + GFF7234 0.34 -0.4 14,980 + GFF7234 0.34 -0.1 14,980 + GFF7234 0.34 -1.2 14,980 + GFF7234 0.34 +1.5 14,980 + GFF7234 0.34 -0.1 14,981 - GFF7234 0.35 +1.4 14,981 - GFF7234 0.35 -3.0 14,981 - GFF7234 0.35 -0.1 14,981 - GFF7234 0.35 -1.7 14,981 - GFF7234 0.35 -0.2 14,981 - GFF7234 0.35 +0.2 15,272 - GFF7234 0.58 +0.9 15,272 - GFF7234 0.58 +1.4 15,272 - GFF7234 0.58 -1.8 15,646 + GFF7234 0.89 -0.9 15,647 - GFF7234 0.89 +0.5 15,647 - GFF7234 0.89 -0.3 15,647 - GFF7234 0.89 +0.9 15,647 - GFF7234 0.89 -1.1 15,766 + +0.2 15,767 - -3.2 15,767 - +2.0 16,014 + GFF7235 0.17 -1.2 16,015 - GFF7235 0.17 +0.7 16,254 + GFF7235 0.35 -1.3 16,255 - GFF7235 0.35 +0.2 16,269 + GFF7235 0.36 -1.3 16,479 + GFF7235 0.51 -0.6 16,497 + GFF7235 0.53 -1.5 16,497 + GFF7235 0.53 -2.9 16,497 + GFF7235 0.53 +0.4 16,497 + GFF7235 0.53 -0.1 16,497 + GFF7235 0.53 +3.7 16,498 - GFF7235 0.53 +1.8 16,498 - GFF7235 0.53 +0.2 16,548 + GFF7235 0.56 +1.2 16,549 - GFF7235 0.56 +0.3 16,657 - GFF7235 0.64 -0.3 16,657 - GFF7235 0.64 +0.2 16,870 - GFF7235 0.80 +1.9 16,893 + GFF7235 0.82 +2.2 16,893 + GFF7235 0.82 +2.8 16,893 + GFF7235 0.82 -2.3 16,893 + GFF7235 0.82 +1.2 17,019 + +0.8 17,019 + -0.9 17,019 + +1.6 17,019 + -0.8 17,019 + -1.1 17,055 - -3.3 17,128 + -2.3 17,583 - GFF7236 0.45 +1.1 18,014 + +0.2 18,066 + -1.1 18,067 - -1.2
Or see this region's nucleotide sequence