Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7191 and GFF7192 are separated by 59 nucleotides GFF7192 and GFF7193 overlap by 4 nucleotides
GFF7191 - Acyl-CoA dehydrogenase; probable dibenzothiophene desulfurization enzyme, at 8,452 to 9,633
GFF7191
GFF7192 - ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines), at 9,693 to 11,291
GFF7192
GFF7193 - ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines), at 11,288 to 12,325
GFF7193
Position (kb) 9
10
11
12 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 8.905 kb on + strand, within GFF7191 at 8.905 kb on + strand, within GFF7191 at 8.905 kb on + strand, within GFF7191 at 8.906 kb on - strand, within GFF7191 at 8.981 kb on - strand, within GFF7191 at 8.981 kb on - strand, within GFF7191 at 8.981 kb on - strand, within GFF7191 at 9.844 kb on + strand at 9.845 kb on - strand at 9.880 kb on - strand, within GFF7192 at 10.368 kb on + strand, within GFF7192 at 10.369 kb on - strand, within GFF7192 at 10.641 kb on + strand, within GFF7192 at 10.641 kb on + strand, within GFF7192 at 10.641 kb on + strand, within GFF7192 at 10.641 kb on + strand, within GFF7192 at 10.654 kb on - strand, within GFF7192 at 10.702 kb on - strand, within GFF7192 at 10.833 kb on + strand, within GFF7192 at 10.833 kb on + strand, within GFF7192 at 11.016 kb on + strand, within GFF7192 at 11.131 kb on - strand, within GFF7192 at 11.240 kb on + strand at 11.240 kb on + strand at 11.244 kb on + strand at 11.247 kb on + strand at 11.247 kb on + strand at 11.248 kb on - strand at 11.248 kb on - strand at 11.517 kb on - strand, within GFF7193 at 11.517 kb on - strand, within GFF7193 at 11.771 kb on + strand, within GFF7193 at 11.771 kb on + strand, within GFF7193 at 11.771 kb on + strand, within GFF7193 at 11.771 kb on + strand, within GFF7193 at 11.772 kb on - strand, within GFF7193 at 11.772 kb on - strand, within GFF7193 at 11.772 kb on - strand, within GFF7193 at 11.772 kb on - strand, within GFF7193 at 11.772 kb on - strand, within GFF7193 at 11.781 kb on - strand, within GFF7193 at 11.781 kb on - strand, within GFF7193 at 11.781 kb on - strand, within GFF7193 at 11.781 kb on - strand, within GFF7193 at 12.122 kb on + strand, within GFF7193 at 12.122 kb on + strand, within GFF7193 at 12.122 kb on + strand, within GFF7193 at 12.123 kb on - strand, within GFF7193 at 12.182 kb on + strand, within GFF7193 at 12.182 kb on + strand, within GFF7193 at 12.182 kb on + strand, within GFF7193 at 12.182 kb on + strand, within GFF7193 at 12.183 kb on - strand, within GFF7193 at 12.183 kb on - strand, within GFF7193 at 12.183 kb on - strand, within GFF7193
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 8,905 + GFF7191 0.38 +1.2 8,905 + GFF7191 0.38 +0.5 8,905 + GFF7191 0.38 -2.4 8,906 - GFF7191 0.38 +0.0 8,981 - GFF7191 0.45 -0.4 8,981 - GFF7191 0.45 +0.8 8,981 - GFF7191 0.45 +2.2 9,844 + -0.3 9,845 - -1.8 9,880 - GFF7192 0.12 -1.4 10,368 + GFF7192 0.42 -0.3 10,369 - GFF7192 0.42 +0.0 10,641 + GFF7192 0.59 -0.9 10,641 + GFF7192 0.59 -3.0 10,641 + GFF7192 0.59 -1.7 10,641 + GFF7192 0.59 -1.0 10,654 - GFF7192 0.60 +0.0 10,702 - GFF7192 0.63 -0.9 10,833 + GFF7192 0.71 +0.8 10,833 + GFF7192 0.71 -0.4 11,016 + GFF7192 0.83 -0.6 11,131 - GFF7192 0.90 -1.8 11,240 + -3.0 11,240 + -2.5 11,244 + -1.3 11,247 + +1.0 11,247 + -0.4 11,248 - +0.2 11,248 - -0.2 11,517 - GFF7193 0.22 +0.5 11,517 - GFF7193 0.22 -3.0 11,771 + GFF7193 0.47 -0.4 11,771 + GFF7193 0.47 +0.2 11,771 + GFF7193 0.47 -2.0 11,771 + GFF7193 0.47 -0.0 11,772 - GFF7193 0.47 -1.1 11,772 - GFF7193 0.47 -2.4 11,772 - GFF7193 0.47 -1.8 11,772 - GFF7193 0.47 -1.1 11,772 - GFF7193 0.47 +0.1 11,781 - GFF7193 0.47 -3.0 11,781 - GFF7193 0.47 -1.7 11,781 - GFF7193 0.47 +0.9 11,781 - GFF7193 0.47 -2.6 12,122 + GFF7193 0.80 -0.4 12,122 + GFF7193 0.80 -1.8 12,122 + GFF7193 0.80 +0.0 12,123 - GFF7193 0.80 -0.4 12,182 + GFF7193 0.86 +1.9 12,182 + GFF7193 0.86 +4.0 12,182 + GFF7193 0.86 -3.2 12,182 + GFF7193 0.86 -2.0 12,183 - GFF7193 0.86 -1.7 12,183 - GFF7193 0.86 -2.3 12,183 - GFF7193 0.86 -0.4
Or see this region's nucleotide sequence