Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF716 and GFF717 are separated by 28 nucleotides GFF717 and GFF718 are separated by 142 nucleotides GFF718 and GFF719 are separated by 8 nucleotides
GFF716 - no description, at 774,955 to 775,608
GFF716
GFF717 - Enoyl-CoA hydratase (EC 4.2.1.17), at 775,637 to 776,428
GFF717
GFF718 - AraC-type DNA-binding domain-containing proteins, at 776,571 to 777,587
GFF718
GFF719 - no description, at 777,596 to 778,591
GFF719
Position (kb) 776
777
778 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 776.046 kb on + strand, within GFF717 at 776.047 kb on - strand, within GFF717 at 776.047 kb on - strand, within GFF717 at 776.446 kb on + strand at 776.742 kb on + strand, within GFF718 at 776.742 kb on + strand, within GFF718 at 776.742 kb on + strand, within GFF718 at 776.742 kb on + strand, within GFF718 at 776.742 kb on + strand, within GFF718 at 776.742 kb on + strand, within GFF718 at 776.742 kb on + strand, within GFF718 at 776.743 kb on - strand, within GFF718 at 776.743 kb on - strand, within GFF718 at 776.743 kb on - strand, within GFF718 at 776.743 kb on - strand, within GFF718 at 776.820 kb on + strand, within GFF718 at 776.820 kb on + strand, within GFF718 at 776.821 kb on - strand, within GFF718 at 776.869 kb on - strand, within GFF718 at 777.424 kb on + strand, within GFF718 at 777.424 kb on + strand, within GFF718 at 777.424 kb on + strand, within GFF718 at 777.425 kb on - strand, within GFF718 at 777.630 kb on + strand at 777.631 kb on - strand at 777.883 kb on - strand, within GFF719 at 777.883 kb on - strand, within GFF719 at 777.906 kb on + strand, within GFF719 at 777.907 kb on - strand, within GFF719 at 777.907 kb on - strand, within GFF719 at 777.907 kb on - strand, within GFF719 at 777.907 kb on - strand, within GFF719 at 777.907 kb on - strand, within GFF719 at 777.922 kb on - strand, within GFF719 at 777.993 kb on + strand, within GFF719 at 777.994 kb on - strand, within GFF719 at 778.074 kb on + strand, within GFF719 at 778.074 kb on + strand, within GFF719 at 778.074 kb on + strand, within GFF719 at 778.074 kb on + strand, within GFF719 at 778.074 kb on + strand, within GFF719 at 778.074 kb on + strand, within GFF719 at 778.074 kb on + strand, within GFF719 at 778.074 kb on + strand, within GFF719 at 778.075 kb on - strand, within GFF719 at 778.075 kb on - strand, within GFF719 at 778.075 kb on - strand, within GFF719 at 778.075 kb on - strand, within GFF719 at 778.075 kb on - strand, within GFF719 at 778.075 kb on - strand, within GFF719 at 778.075 kb on - strand, within GFF719 at 778.075 kb on - strand, within GFF719 at 778.075 kb on - strand, within GFF719 at 778.075 kb on - strand, within GFF719 at 778.143 kb on + strand, within GFF719 at 778.143 kb on + strand, within GFF719 at 778.146 kb on + strand, within GFF719 at 778.146 kb on + strand, within GFF719 at 778.146 kb on + strand, within GFF719 at 778.146 kb on + strand, within GFF719 at 778.146 kb on + strand, within GFF719 at 778.147 kb on - strand, within GFF719 at 778.147 kb on - strand, within GFF719 at 778.147 kb on - strand, within GFF719 at 778.224 kb on + strand, within GFF719 at 778.225 kb on - strand, within GFF719 at 778.225 kb on - strand, within GFF719 at 778.225 kb on - strand, within GFF719 at 778.225 kb on - strand, within GFF719 at 778.263 kb on + strand, within GFF719 at 778.263 kb on + strand, within GFF719 at 778.264 kb on - strand, within GFF719 at 778.264 kb on - strand, within GFF719 at 778.288 kb on - strand, within GFF719 at 778.317 kb on + strand, within GFF719 at 778.318 kb on - strand, within GFF719 at 778.479 kb on + strand, within GFF719 at 778.479 kb on + strand, within GFF719 at 778.480 kb on - strand, within GFF719 at 778.480 kb on - strand, within GFF719 at 778.480 kb on - strand, within GFF719
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 776,046 + GFF717 0.52 -1.6 776,047 - GFF717 0.52 -0.7 776,047 - GFF717 0.52 +1.5 776,446 + -0.7 776,742 + GFF718 0.17 +1.2 776,742 + GFF718 0.17 -2.7 776,742 + GFF718 0.17 -0.3 776,742 + GFF718 0.17 -0.0 776,742 + GFF718 0.17 -1.6 776,742 + GFF718 0.17 -0.7 776,742 + GFF718 0.17 -2.4 776,743 - GFF718 0.17 -1.7 776,743 - GFF718 0.17 -0.5 776,743 - GFF718 0.17 -0.3 776,743 - GFF718 0.17 -1.0 776,820 + GFF718 0.24 -2.4 776,820 + GFF718 0.24 +0.6 776,821 - GFF718 0.25 -2.3 776,869 - GFF718 0.29 -0.9 777,424 + GFF718 0.84 -0.0 777,424 + GFF718 0.84 -0.4 777,424 + GFF718 0.84 -0.4 777,425 - GFF718 0.84 +1.1 777,630 + -1.7 777,631 - +2.2 777,883 - GFF719 0.29 -2.4 777,883 - GFF719 0.29 +3.2 777,906 + GFF719 0.31 +2.9 777,907 - GFF719 0.31 -2.1 777,907 - GFF719 0.31 +0.2 777,907 - GFF719 0.31 -0.2 777,907 - GFF719 0.31 -0.0 777,907 - GFF719 0.31 +1.3 777,922 - GFF719 0.33 +0.2 777,993 + GFF719 0.40 -2.7 777,994 - GFF719 0.40 +0.5 778,074 + GFF719 0.48 -1.6 778,074 + GFF719 0.48 -1.4 778,074 + GFF719 0.48 +0.4 778,074 + GFF719 0.48 -0.7 778,074 + GFF719 0.48 -2.5 778,074 + GFF719 0.48 +1.9 778,074 + GFF719 0.48 +0.7 778,074 + GFF719 0.48 +1.2 778,075 - GFF719 0.48 -0.0 778,075 - GFF719 0.48 -0.5 778,075 - GFF719 0.48 -0.1 778,075 - GFF719 0.48 -0.7 778,075 - GFF719 0.48 -1.6 778,075 - GFF719 0.48 -1.9 778,075 - GFF719 0.48 -2.2 778,075 - GFF719 0.48 -0.3 778,075 - GFF719 0.48 +0.8 778,075 - GFF719 0.48 -2.3 778,143 + GFF719 0.55 -1.7 778,143 + GFF719 0.55 -1.2 778,146 + GFF719 0.55 +1.7 778,146 + GFF719 0.55 -0.7 778,146 + GFF719 0.55 -1.7 778,146 + GFF719 0.55 -0.0 778,146 + GFF719 0.55 -1.7 778,147 - GFF719 0.55 -4.1 778,147 - GFF719 0.55 -0.3 778,147 - GFF719 0.55 -1.2 778,224 + GFF719 0.63 -0.3 778,225 - GFF719 0.63 +1.0 778,225 - GFF719 0.63 +0.6 778,225 - GFF719 0.63 +1.5 778,225 - GFF719 0.63 -1.0 778,263 + GFF719 0.67 -2.0 778,263 + GFF719 0.67 -1.5 778,264 - GFF719 0.67 +1.2 778,264 - GFF719 0.67 +0.6 778,288 - GFF719 0.69 +0.2 778,317 + GFF719 0.72 -0.0 778,318 - GFF719 0.72 -0.4 778,479 + GFF719 0.89 -0.6 778,479 + GFF719 0.89 -1.4 778,480 - GFF719 0.89 -2.0 778,480 - GFF719 0.89 -2.4 778,480 - GFF719 0.89 +0.8
Or see this region's nucleotide sequence