Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7123 and GFF7124 are separated by 724 nucleotides GFF7124 and GFF7125 are separated by 15 nucleotides GFF7125 and GFF7126 are separated by 158 nucleotides GFF7126 and GFF7127 overlap by 25 nucleotides
GFF7123 - BUG/TctC family periplasmic protein, at 41,016 to 42,008
GFF7123
GFF7124 - Mobile element protein, at 42,733 to 43,452
GFF7124
GFF7125 - no description, at 43,468 to 43,686
GFF7125
GFF7126 - KEGG: transposase, at 43,845 to 44,285
GFF7126
GFF7127 - Mobile element protein, at 44,261 to 44,611
GFF7127
Position (kb) 42
43
44 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 41.740 kb on + strand, within GFF7123 at 41.740 kb on + strand, within GFF7123 at 41.741 kb on - strand, within GFF7123 at 41.741 kb on - strand, within GFF7123 at 41.741 kb on - strand, within GFF7123 at 41.741 kb on - strand, within GFF7123 at 42.013 kb on + strand at 42.013 kb on + strand at 42.013 kb on + strand at 42.014 kb on - strand at 42.014 kb on - strand at 42.014 kb on - strand at 42.014 kb on - strand at 42.184 kb on + strand at 42.321 kb on + strand at 42.321 kb on + strand at 42.321 kb on + strand at 42.321 kb on + strand at 42.321 kb on + strand at 42.321 kb on + strand at 42.322 kb on - strand at 42.322 kb on - strand at 42.322 kb on - strand at 42.322 kb on - strand at 42.322 kb on - strand at 42.327 kb on + strand at 42.328 kb on - strand at 42.578 kb on + strand at 42.578 kb on + strand at 42.579 kb on - strand at 42.667 kb on - strand at 42.698 kb on + strand at 42.698 kb on + strand at 42.698 kb on + strand at 42.698 kb on + strand at 42.698 kb on + strand at 42.699 kb on - strand at 42.704 kb on + strand at 42.704 kb on + strand at 42.704 kb on + strand at 42.705 kb on - strand at 42.705 kb on - strand at 42.705 kb on - strand at 43.079 kb on + strand, within GFF7124 at 43.079 kb on + strand, within GFF7124 at 43.080 kb on - strand, within GFF7124 at 43.080 kb on - strand, within GFF7124 at 43.080 kb on - strand, within GFF7124 at 43.080 kb on - strand, within GFF7124 at 43.080 kb on - strand, within GFF7124 at 43.111 kb on - strand, within GFF7124 at 43.151 kb on + strand, within GFF7124 at 43.151 kb on + strand, within GFF7124 at 43.151 kb on + strand, within GFF7124 at 43.151 kb on + strand, within GFF7124 at 43.151 kb on + strand, within GFF7124 at 43.151 kb on + strand, within GFF7124 at 43.151 kb on + strand, within GFF7124 at 43.151 kb on + strand, within GFF7124 at 43.152 kb on - strand, within GFF7124 at 43.152 kb on - strand, within GFF7124 at 43.152 kb on - strand, within GFF7124 at 43.152 kb on - strand, within GFF7124 at 43.170 kb on - strand, within GFF7124 at 43.170 kb on - strand, within GFF7124 at 43.217 kb on + strand, within GFF7124 at 43.218 kb on - strand, within GFF7124 at 43.284 kb on - strand, within GFF7124 at 43.761 kb on + strand at 43.762 kb on - strand at 43.762 kb on - strand at 43.812 kb on + strand at 43.812 kb on + strand at 43.812 kb on + strand at 43.813 kb on - strand at 43.813 kb on - strand at 43.813 kb on - strand at 43.824 kb on + strand at 43.824 kb on + strand at 43.825 kb on - strand at 43.825 kb on - strand at 43.842 kb on + strand at 43.843 kb on - strand at 43.914 kb on + strand, within GFF7126 at 43.915 kb on - strand, within GFF7126 at 43.915 kb on - strand, within GFF7126 at 43.915 kb on - strand, within GFF7126 at 43.915 kb on - strand, within GFF7126 at 44.054 kb on + strand, within GFF7126 at 44.291 kb on + strand at 44.291 kb on + strand at 44.390 kb on + strand, within GFF7127 at 44.390 kb on + strand, within GFF7127 at 44.391 kb on - strand, within GFF7127 at 44.391 kb on - strand, within GFF7127 at 44.391 kb on - strand, within GFF7127 at 44.391 kb on - strand, within GFF7127 at 44.391 kb on - strand, within GFF7127 at 44.391 kb on - strand, within GFF7127 at 44.391 kb on - strand, within GFF7127
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 41,740 + GFF7123 0.73 +0.7 41,740 + GFF7123 0.73 -1.3 41,741 - GFF7123 0.73 -1.2 41,741 - GFF7123 0.73 -0.3 41,741 - GFF7123 0.73 -0.1 41,741 - GFF7123 0.73 +0.2 42,013 + -0.3 42,013 + -0.2 42,013 + -0.0 42,014 - +1.5 42,014 - +0.7 42,014 - +0.7 42,014 - -0.9 42,184 + -0.8 42,321 + -2.0 42,321 + +0.7 42,321 + -1.4 42,321 + -3.5 42,321 + +1.4 42,321 + -1.9 42,322 - +0.0 42,322 - -1.4 42,322 - -1.7 42,322 - -0.7 42,322 - -1.0 42,327 + +0.5 42,328 - -1.7 42,578 + -1.0 42,578 + -1.7 42,579 - +1.7 42,667 - -1.2 42,698 + -1.2 42,698 + -0.9 42,698 + +2.9 42,698 + +2.7 42,698 + +2.4 42,699 - +1.3 42,704 + +1.0 42,704 + -1.2 42,704 + -1.0 42,705 - -2.2 42,705 - -1.3 42,705 - +1.2 43,079 + GFF7124 0.48 -1.2 43,079 + GFF7124 0.48 +2.3 43,080 - GFF7124 0.48 +0.3 43,080 - GFF7124 0.48 -0.4 43,080 - GFF7124 0.48 -0.7 43,080 - GFF7124 0.48 +1.3 43,080 - GFF7124 0.48 -1.8 43,111 - GFF7124 0.53 +0.5 43,151 + GFF7124 0.58 +0.6 43,151 + GFF7124 0.58 +0.5 43,151 + GFF7124 0.58 -2.9 43,151 + GFF7124 0.58 +0.6 43,151 + GFF7124 0.58 -0.7 43,151 + GFF7124 0.58 +2.2 43,151 + GFF7124 0.58 -1.4 43,151 + GFF7124 0.58 -1.0 43,152 - GFF7124 0.58 -0.3 43,152 - GFF7124 0.58 -0.3 43,152 - GFF7124 0.58 +1.5 43,152 - GFF7124 0.58 +0.9 43,170 - GFF7124 0.61 -0.3 43,170 - GFF7124 0.61 -0.2 43,217 + GFF7124 0.67 -1.0 43,218 - GFF7124 0.67 -0.5 43,284 - GFF7124 0.77 +3.2 43,761 + -1.6 43,762 - +0.9 43,762 - -0.6 43,812 + +2.6 43,812 + -1.1 43,812 + +2.9 43,813 - +1.6 43,813 - -0.5 43,813 - -0.9 43,824 + -1.0 43,824 + -1.5 43,825 - +0.7 43,825 - -0.5 43,842 + -0.4 43,843 - -0.4 43,914 + GFF7126 0.16 -0.1 43,915 - GFF7126 0.16 -3.2 43,915 - GFF7126 0.16 -0.0 43,915 - GFF7126 0.16 -1.0 43,915 - GFF7126 0.16 +2.3 44,054 + GFF7126 0.47 -3.0 44,291 + -1.4 44,291 + -0.9 44,390 + GFF7127 0.37 -0.5 44,390 + GFF7127 0.37 -1.2 44,391 - GFF7127 0.37 -0.7 44,391 - GFF7127 0.37 +0.8 44,391 - GFF7127 0.37 -0.3 44,391 - GFF7127 0.37 +1.8 44,391 - GFF7127 0.37 -1.3 44,391 - GFF7127 0.37 -2.3 44,391 - GFF7127 0.37 +0.3
Or see this region's nucleotide sequence