Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF706 and GFF707 overlap by 4 nucleotides GFF707 and GFF708 are separated by 4 nucleotides
GFF706 - hypothetical protein, at 762,730 to 764,142
GFF706
GFF707 - probable integral membrane protein NMA1898, at 764,139 to 765,566
GFF707
GFF708 - Oxidoreductase, GMC family, at 765,571 to 767,286
GFF708
Position (kb) 764
765
766 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 763.360 kb on + strand, within GFF706 at 763.361 kb on - strand, within GFF706 at 763.546 kb on + strand, within GFF706 at 763.547 kb on - strand, within GFF706 at 763.639 kb on + strand, within GFF706 at 763.639 kb on + strand, within GFF706 at 763.640 kb on - strand, within GFF706 at 763.640 kb on - strand, within GFF706 at 763.640 kb on - strand, within GFF706 at 763.643 kb on - strand, within GFF706 at 763.643 kb on - strand, within GFF706 at 764.659 kb on - strand, within GFF707 at 764.724 kb on + strand, within GFF707 at 764.724 kb on + strand, within GFF707 at 764.724 kb on + strand, within GFF707 at 764.724 kb on + strand, within GFF707 at 764.724 kb on + strand, within GFF707 at 764.724 kb on + strand, within GFF707 at 764.724 kb on + strand, within GFF707 at 764.724 kb on + strand, within GFF707 at 764.724 kb on + strand, within GFF707 at 764.725 kb on - strand, within GFF707 at 764.725 kb on - strand, within GFF707 at 764.725 kb on - strand, within GFF707 at 764.986 kb on - strand, within GFF707 at 764.986 kb on - strand, within GFF707 at 765.716 kb on + strand at 765.996 kb on - strand, within GFF708 at 765.996 kb on - strand, within GFF708 at 766.298 kb on + strand, within GFF708 at 766.298 kb on + strand, within GFF708 at 766.298 kb on + strand, within GFF708 at 766.299 kb on - strand, within GFF708 at 766.299 kb on - strand, within GFF708 at 766.361 kb on + strand, within GFF708 at 766.362 kb on - strand, within GFF708
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 763,360 + GFF706 0.45 -1.3 763,361 - GFF706 0.45 -1.4 763,546 + GFF706 0.58 -0.5 763,547 - GFF706 0.58 -1.4 763,639 + GFF706 0.64 +2.4 763,639 + GFF706 0.64 -1.0 763,640 - GFF706 0.64 -2.6 763,640 - GFF706 0.64 -1.0 763,640 - GFF706 0.64 -2.3 763,643 - GFF706 0.65 +0.2 763,643 - GFF706 0.65 -1.2 764,659 - GFF707 0.36 -0.1 764,724 + GFF707 0.41 -2.5 764,724 + GFF707 0.41 -1.2 764,724 + GFF707 0.41 +0.1 764,724 + GFF707 0.41 -0.4 764,724 + GFF707 0.41 +0.4 764,724 + GFF707 0.41 +1.2 764,724 + GFF707 0.41 -0.3 764,724 + GFF707 0.41 +0.4 764,724 + GFF707 0.41 +1.1 764,725 - GFF707 0.41 +0.7 764,725 - GFF707 0.41 -3.8 764,725 - GFF707 0.41 +0.6 764,986 - GFF707 0.59 -0.2 764,986 - GFF707 0.59 -2.8 765,716 + -0.4 765,996 - GFF708 0.25 -3.5 765,996 - GFF708 0.25 +0.2 766,298 + GFF708 0.42 -0.4 766,298 + GFF708 0.42 +1.1 766,298 + GFF708 0.42 -1.0 766,299 - GFF708 0.42 -1.5 766,299 - GFF708 0.42 +0.8 766,361 + GFF708 0.46 +0.1 766,362 - GFF708 0.46 +1.2
Or see this region's nucleotide sequence