Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF703 and GFF704 are separated by 6 nucleotides GFF704 and GFF705 are separated by 83 nucleotides GFF705 and GFF706 are separated by 370 nucleotides
GFF703 - Efflux ABC transporter, permease/ATP-binding protein Atu2242, at 759,400 to 761,256
GFF703
GFF704 - Lactoylglutathione lyase and related lyases, at 761,263 to 761,694
GFF704
GFF705 - Transcriptional regulator, AcrR family, at 761,778 to 762,359
GFF705
GFF706 - hypothetical protein, at 762,730 to 764,142
GFF706
Position (kb) 761
762
763 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 761.035 kb on + strand, within GFF703 at 761.035 kb on + strand, within GFF703 at 761.035 kb on + strand, within GFF703 at 761.035 kb on + strand, within GFF703 at 761.068 kb on - strand, within GFF703 at 761.135 kb on + strand at 761.136 kb on - strand at 761.179 kb on + strand at 761.180 kb on - strand at 761.291 kb on + strand at 761.292 kb on - strand at 761.585 kb on + strand, within GFF704 at 761.585 kb on + strand, within GFF704 at 761.585 kb on + strand, within GFF704 at 761.585 kb on + strand, within GFF704 at 761.585 kb on + strand, within GFF704 at 761.585 kb on + strand, within GFF704 at 761.585 kb on + strand, within GFF704 at 761.585 kb on + strand, within GFF704 at 761.585 kb on + strand, within GFF704 at 761.585 kb on + strand, within GFF704 at 761.585 kb on + strand, within GFF704 at 761.586 kb on - strand, within GFF704 at 761.586 kb on - strand, within GFF704 at 761.586 kb on - strand, within GFF704 at 761.586 kb on - strand, within GFF704 at 761.586 kb on - strand, within GFF704 at 761.630 kb on + strand, within GFF704 at 761.630 kb on + strand, within GFF704 at 761.630 kb on + strand, within GFF704 at 761.631 kb on - strand, within GFF704 at 761.631 kb on - strand, within GFF704 at 761.631 kb on - strand, within GFF704 at 761.631 kb on - strand, within GFF704 at 761.631 kb on - strand, within GFF704 at 761.676 kb on - strand at 761.678 kb on + strand at 761.678 kb on + strand at 761.678 kb on + strand at 761.678 kb on + strand at 761.678 kb on + strand at 761.678 kb on + strand at 761.679 kb on - strand at 761.679 kb on - strand at 761.679 kb on - strand at 761.679 kb on - strand at 761.679 kb on - strand at 761.679 kb on - strand at 761.679 kb on - strand at 761.679 kb on - strand at 761.679 kb on - strand at 761.679 kb on - strand at 761.679 kb on - strand at 761.679 kb on - strand at 761.737 kb on - strand at 761.744 kb on - strand at 761.749 kb on - strand at 761.784 kb on - strand at 761.784 kb on - strand at 761.784 kb on - strand at 761.824 kb on + strand at 761.824 kb on + strand at 761.824 kb on + strand at 761.824 kb on + strand at 761.824 kb on + strand at 761.824 kb on + strand at 761.825 kb on - strand at 761.825 kb on - strand at 761.825 kb on - strand at 761.825 kb on - strand at 761.825 kb on - strand at 761.825 kb on - strand at 761.859 kb on + strand, within GFF705 at 761.919 kb on + strand, within GFF705 at 761.919 kb on + strand, within GFF705 at 761.919 kb on + strand, within GFF705 at 761.919 kb on + strand, within GFF705 at 761.920 kb on - strand, within GFF705 at 761.920 kb on - strand, within GFF705 at 761.920 kb on - strand, within GFF705 at 762.057 kb on + strand, within GFF705 at 762.058 kb on - strand, within GFF705 at 762.058 kb on - strand, within GFF705 at 762.390 kb on + strand at 762.391 kb on - strand at 762.391 kb on - strand at 762.436 kb on + strand at 762.437 kb on - strand at 762.437 kb on - strand at 762.437 kb on - strand at 762.437 kb on - strand at 762.437 kb on - strand at 762.437 kb on - strand at 762.437 kb on - strand at 762.525 kb on - strand at 762.533 kb on + strand at 762.533 kb on + strand at 762.533 kb on + strand at 762.533 kb on + strand at 762.533 kb on + strand at 762.533 kb on + strand at 762.534 kb on - strand at 762.534 kb on - strand at 762.534 kb on - strand at 762.534 kb on - strand at 762.534 kb on - strand at 762.534 kb on - strand at 762.534 kb on - strand at 762.679 kb on + strand at 762.679 kb on + strand at 762.680 kb on - strand at 762.680 kb on - strand at 762.680 kb on - strand at 762.788 kb on + strand at 762.789 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 761,035 + GFF703 0.88 -2.5 761,035 + GFF703 0.88 +0.1 761,035 + GFF703 0.88 +1.6 761,035 + GFF703 0.88 -2.3 761,068 - GFF703 0.90 -0.6 761,135 + -1.2 761,136 - +1.0 761,179 + -0.8 761,180 - -1.7 761,291 + +2.7 761,292 - -0.0 761,585 + GFF704 0.75 -1.0 761,585 + GFF704 0.75 -0.9 761,585 + GFF704 0.75 +0.5 761,585 + GFF704 0.75 -0.6 761,585 + GFF704 0.75 -0.4 761,585 + GFF704 0.75 +0.3 761,585 + GFF704 0.75 +1.4 761,585 + GFF704 0.75 -1.0 761,585 + GFF704 0.75 -0.4 761,585 + GFF704 0.75 +1.3 761,585 + GFF704 0.75 +0.0 761,586 - GFF704 0.75 -0.7 761,586 - GFF704 0.75 -0.5 761,586 - GFF704 0.75 +0.6 761,586 - GFF704 0.75 -4.2 761,586 - GFF704 0.75 +0.1 761,630 + GFF704 0.85 -0.4 761,630 + GFF704 0.85 -0.5 761,630 + GFF704 0.85 +0.6 761,631 - GFF704 0.85 -1.6 761,631 - GFF704 0.85 -2.6 761,631 - GFF704 0.85 +0.1 761,631 - GFF704 0.85 +4.8 761,631 - GFF704 0.85 -2.2 761,676 - -2.9 761,678 + -0.8 761,678 + +0.8 761,678 + -1.5 761,678 + -1.0 761,678 + -0.9 761,678 + -1.1 761,679 - -0.2 761,679 - -2.7 761,679 - -1.1 761,679 - -2.7 761,679 - -1.0 761,679 - +1.4 761,679 - +1.7 761,679 - -0.2 761,679 - -0.5 761,679 - -2.1 761,679 - -0.4 761,679 - -2.0 761,737 - +0.3 761,744 - -1.8 761,749 - -1.7 761,784 - -0.1 761,784 - -0.0 761,784 - +0.2 761,824 + +0.3 761,824 + +0.6 761,824 + -0.4 761,824 + +2.4 761,824 + +0.5 761,824 + +1.3 761,825 - -1.4 761,825 - -1.4 761,825 - +1.1 761,825 - +0.3 761,825 - -0.7 761,825 - +1.0 761,859 + GFF705 0.14 -2.2 761,919 + GFF705 0.24 -3.6 761,919 + GFF705 0.24 -0.4 761,919 + GFF705 0.24 -0.6 761,919 + GFF705 0.24 -1.2 761,920 - GFF705 0.24 -2.9 761,920 - GFF705 0.24 -0.3 761,920 - GFF705 0.24 -0.0 762,057 + GFF705 0.48 -0.9 762,058 - GFF705 0.48 +0.1 762,058 - GFF705 0.48 -2.7 762,390 + -0.3 762,391 - +0.4 762,391 - +2.3 762,436 + -0.9 762,437 - -2.1 762,437 - +0.6 762,437 - +0.6 762,437 - +1.6 762,437 - +0.4 762,437 - -2.2 762,437 - +0.4 762,525 - -0.2 762,533 + -1.6 762,533 + +0.9 762,533 + -0.6 762,533 + +0.3 762,533 + -1.0 762,533 + -0.0 762,534 - +1.7 762,534 - +0.2 762,534 - +1.3 762,534 - +1.2 762,534 - +2.1 762,534 - -1.6 762,534 - -0.1 762,679 + -0.1 762,679 + +0.0 762,680 - -1.4 762,680 - +0.3 762,680 - -0.7 762,788 + -1.0 762,789 - -1.0
Or see this region's nucleotide sequence