Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF702 and GFF703 are separated by 219 nucleotides GFF703 and GFF704 are separated by 6 nucleotides GFF704 and GFF705 are separated by 83 nucleotides
GFF702 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 757,951 to 759,180
GFF702
GFF703 - Efflux ABC transporter, permease/ATP-binding protein Atu2242, at 759,400 to 761,256
GFF703
GFF704 - Lactoylglutathione lyase and related lyases, at 761,263 to 761,694
GFF704
GFF705 - Transcriptional regulator, AcrR family, at 761,778 to 762,359
GFF705
Position (kb) 759
760
761
762 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 758.499 kb on - strand, within GFF702 at 758.499 kb on - strand, within GFF702 at 758.648 kb on + strand, within GFF702 at 758.649 kb on - strand, within GFF702 at 758.649 kb on - strand, within GFF702 at 758.759 kb on + strand, within GFF702 at 758.882 kb on + strand, within GFF702 at 758.882 kb on + strand, within GFF702 at 758.882 kb on + strand, within GFF702 at 758.882 kb on + strand, within GFF702 at 758.883 kb on - strand, within GFF702 at 758.883 kb on - strand, within GFF702 at 758.883 kb on - strand, within GFF702 at 758.883 kb on - strand, within GFF702 at 758.883 kb on - strand, within GFF702 at 758.883 kb on - strand, within GFF702 at 759.260 kb on + strand at 759.261 kb on - strand at 759.261 kb on - strand at 759.368 kb on - strand at 759.434 kb on - strand at 759.793 kb on + strand, within GFF703 at 759.793 kb on + strand, within GFF703 at 759.793 kb on + strand, within GFF703 at 759.794 kb on - strand, within GFF703 at 759.794 kb on - strand, within GFF703 at 759.794 kb on - strand, within GFF703 at 759.794 kb on - strand, within GFF703 at 759.901 kb on + strand, within GFF703 at 759.901 kb on + strand, within GFF703 at 759.901 kb on + strand, within GFF703 at 759.901 kb on + strand, within GFF703 at 759.901 kb on + strand, within GFF703 at 759.901 kb on + strand, within GFF703 at 759.902 kb on - strand, within GFF703 at 759.902 kb on - strand, within GFF703 at 759.902 kb on - strand, within GFF703 at 759.902 kb on - strand, within GFF703 at 759.902 kb on - strand, within GFF703 at 759.902 kb on - strand, within GFF703 at 759.979 kb on + strand, within GFF703 at 759.979 kb on + strand, within GFF703 at 759.979 kb on + strand, within GFF703 at 759.979 kb on + strand, within GFF703 at 759.979 kb on + strand, within GFF703 at 759.979 kb on + strand, within GFF703 at 759.979 kb on + strand, within GFF703 at 759.979 kb on + strand, within GFF703 at 759.979 kb on + strand, within GFF703 at 759.979 kb on + strand, within GFF703 at 759.979 kb on + strand, within GFF703 at 759.980 kb on - strand, within GFF703 at 759.980 kb on - strand, within GFF703 at 759.980 kb on - strand, within GFF703 at 759.980 kb on - strand, within GFF703 at 759.980 kb on - strand, within GFF703 at 759.980 kb on - strand, within GFF703 at 759.980 kb on - strand, within GFF703 at 759.980 kb on - strand, within GFF703 at 759.997 kb on + strand, within GFF703 at 759.997 kb on + strand, within GFF703 at 759.997 kb on + strand, within GFF703 at 759.997 kb on + strand, within GFF703 at 759.997 kb on + strand, within GFF703 at 759.997 kb on + strand, within GFF703 at 759.998 kb on - strand, within GFF703 at 759.998 kb on - strand, within GFF703 at 759.998 kb on - strand, within GFF703 at 759.998 kb on - strand, within GFF703 at 759.998 kb on - strand, within GFF703 at 760.078 kb on + strand, within GFF703 at 760.078 kb on + strand, within GFF703 at 760.078 kb on + strand, within GFF703 at 760.078 kb on + strand, within GFF703 at 760.078 kb on + strand, within GFF703 at 760.079 kb on - strand, within GFF703 at 760.079 kb on - strand, within GFF703 at 760.079 kb on - strand, within GFF703 at 760.769 kb on - strand, within GFF703 at 761.035 kb on + strand, within GFF703 at 761.035 kb on + strand, within GFF703 at 761.035 kb on + strand, within GFF703 at 761.035 kb on + strand, within GFF703 at 761.068 kb on - strand, within GFF703 at 761.135 kb on + strand at 761.136 kb on - strand at 761.179 kb on + strand at 761.180 kb on - strand at 761.291 kb on + strand at 761.292 kb on - strand at 761.585 kb on + strand, within GFF704 at 761.585 kb on + strand, within GFF704 at 761.585 kb on + strand, within GFF704 at 761.585 kb on + strand, within GFF704 at 761.585 kb on + strand, within GFF704 at 761.585 kb on + strand, within GFF704 at 761.585 kb on + strand, within GFF704 at 761.585 kb on + strand, within GFF704 at 761.585 kb on + strand, within GFF704 at 761.585 kb on + strand, within GFF704 at 761.585 kb on + strand, within GFF704 at 761.586 kb on - strand, within GFF704 at 761.586 kb on - strand, within GFF704 at 761.586 kb on - strand, within GFF704 at 761.586 kb on - strand, within GFF704 at 761.586 kb on - strand, within GFF704 at 761.630 kb on + strand, within GFF704 at 761.630 kb on + strand, within GFF704 at 761.630 kb on + strand, within GFF704 at 761.631 kb on - strand, within GFF704 at 761.631 kb on - strand, within GFF704 at 761.631 kb on - strand, within GFF704 at 761.631 kb on - strand, within GFF704 at 761.631 kb on - strand, within GFF704 at 761.676 kb on - strand at 761.678 kb on + strand at 761.678 kb on + strand at 761.678 kb on + strand at 761.678 kb on + strand at 761.678 kb on + strand at 761.678 kb on + strand at 761.679 kb on - strand at 761.679 kb on - strand at 761.679 kb on - strand at 761.679 kb on - strand at 761.679 kb on - strand at 761.679 kb on - strand at 761.679 kb on - strand at 761.679 kb on - strand at 761.679 kb on - strand at 761.679 kb on - strand at 761.679 kb on - strand at 761.679 kb on - strand at 761.737 kb on - strand at 761.744 kb on - strand at 761.749 kb on - strand at 761.784 kb on - strand at 761.784 kb on - strand at 761.784 kb on - strand at 761.824 kb on + strand at 761.824 kb on + strand at 761.824 kb on + strand at 761.824 kb on + strand at 761.824 kb on + strand at 761.824 kb on + strand at 761.825 kb on - strand at 761.825 kb on - strand at 761.825 kb on - strand at 761.825 kb on - strand at 761.825 kb on - strand at 761.825 kb on - strand at 761.859 kb on + strand, within GFF705 at 761.919 kb on + strand, within GFF705 at 761.919 kb on + strand, within GFF705 at 761.919 kb on + strand, within GFF705 at 761.919 kb on + strand, within GFF705 at 761.920 kb on - strand, within GFF705 at 761.920 kb on - strand, within GFF705 at 761.920 kb on - strand, within GFF705 at 762.057 kb on + strand, within GFF705 at 762.058 kb on - strand, within GFF705 at 762.058 kb on - strand, within GFF705
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 758,499 - GFF702 0.45 -2.7 758,499 - GFF702 0.45 -2.0 758,648 + GFF702 0.57 -1.2 758,649 - GFF702 0.57 -2.1 758,649 - GFF702 0.57 +1.3 758,759 + GFF702 0.66 +3.0 758,882 + GFF702 0.76 -3.4 758,882 + GFF702 0.76 +0.8 758,882 + GFF702 0.76 +0.4 758,882 + GFF702 0.76 +0.6 758,883 - GFF702 0.76 -1.1 758,883 - GFF702 0.76 -0.3 758,883 - GFF702 0.76 +0.8 758,883 - GFF702 0.76 -1.4 758,883 - GFF702 0.76 -2.3 758,883 - GFF702 0.76 -1.7 759,260 + -3.4 759,261 - -2.3 759,261 - -0.9 759,368 - +1.7 759,434 - -1.6 759,793 + GFF703 0.21 -0.7 759,793 + GFF703 0.21 -0.9 759,793 + GFF703 0.21 -0.3 759,794 - GFF703 0.21 +0.3 759,794 - GFF703 0.21 -0.4 759,794 - GFF703 0.21 -0.2 759,794 - GFF703 0.21 -2.7 759,901 + GFF703 0.27 +0.0 759,901 + GFF703 0.27 -0.7 759,901 + GFF703 0.27 -1.9 759,901 + GFF703 0.27 -1.6 759,901 + GFF703 0.27 -0.7 759,901 + GFF703 0.27 -1.6 759,902 - GFF703 0.27 -0.9 759,902 - GFF703 0.27 -1.8 759,902 - GFF703 0.27 -1.6 759,902 - GFF703 0.27 -2.4 759,902 - GFF703 0.27 -0.0 759,902 - GFF703 0.27 -2.4 759,979 + GFF703 0.31 -4.3 759,979 + GFF703 0.31 -2.0 759,979 + GFF703 0.31 +0.8 759,979 + GFF703 0.31 -1.3 759,979 + GFF703 0.31 -0.0 759,979 + GFF703 0.31 +0.4 759,979 + GFF703 0.31 -0.4 759,979 + GFF703 0.31 -1.4 759,979 + GFF703 0.31 -1.7 759,979 + GFF703 0.31 +0.3 759,979 + GFF703 0.31 +1.4 759,980 - GFF703 0.31 -1.0 759,980 - GFF703 0.31 -1.4 759,980 - GFF703 0.31 -1.9 759,980 - GFF703 0.31 +1.5 759,980 - GFF703 0.31 -2.1 759,980 - GFF703 0.31 -1.2 759,980 - GFF703 0.31 -1.6 759,980 - GFF703 0.31 +0.6 759,997 + GFF703 0.32 +2.3 759,997 + GFF703 0.32 -1.0 759,997 + GFF703 0.32 +0.7 759,997 + GFF703 0.32 -0.2 759,997 + GFF703 0.32 -0.6 759,997 + GFF703 0.32 -0.4 759,998 - GFF703 0.32 +0.6 759,998 - GFF703 0.32 -0.0 759,998 - GFF703 0.32 +1.4 759,998 - GFF703 0.32 -1.1 759,998 - GFF703 0.32 +1.0 760,078 + GFF703 0.37 -0.7 760,078 + GFF703 0.37 +0.1 760,078 + GFF703 0.37 +1.4 760,078 + GFF703 0.37 -2.1 760,078 + GFF703 0.37 +0.4 760,079 - GFF703 0.37 +0.4 760,079 - GFF703 0.37 +0.7 760,079 - GFF703 0.37 -0.6 760,769 - GFF703 0.74 -1.2 761,035 + GFF703 0.88 -2.5 761,035 + GFF703 0.88 +0.1 761,035 + GFF703 0.88 +1.6 761,035 + GFF703 0.88 -2.3 761,068 - GFF703 0.90 -0.6 761,135 + -1.2 761,136 - +1.0 761,179 + -0.8 761,180 - -1.7 761,291 + +2.7 761,292 - -0.0 761,585 + GFF704 0.75 -1.0 761,585 + GFF704 0.75 -0.9 761,585 + GFF704 0.75 +0.5 761,585 + GFF704 0.75 -0.6 761,585 + GFF704 0.75 -0.4 761,585 + GFF704 0.75 +0.3 761,585 + GFF704 0.75 +1.4 761,585 + GFF704 0.75 -1.0 761,585 + GFF704 0.75 -0.4 761,585 + GFF704 0.75 +1.3 761,585 + GFF704 0.75 +0.0 761,586 - GFF704 0.75 -0.7 761,586 - GFF704 0.75 -0.5 761,586 - GFF704 0.75 +0.6 761,586 - GFF704 0.75 -4.2 761,586 - GFF704 0.75 +0.1 761,630 + GFF704 0.85 -0.4 761,630 + GFF704 0.85 -0.5 761,630 + GFF704 0.85 +0.6 761,631 - GFF704 0.85 -1.6 761,631 - GFF704 0.85 -2.6 761,631 - GFF704 0.85 +0.1 761,631 - GFF704 0.85 +4.8 761,631 - GFF704 0.85 -2.2 761,676 - -2.9 761,678 + -0.8 761,678 + +0.8 761,678 + -1.5 761,678 + -1.0 761,678 + -0.9 761,678 + -1.1 761,679 - -0.2 761,679 - -2.7 761,679 - -1.1 761,679 - -2.7 761,679 - -1.0 761,679 - +1.4 761,679 - +1.7 761,679 - -0.2 761,679 - -0.5 761,679 - -2.1 761,679 - -0.4 761,679 - -2.0 761,737 - +0.3 761,744 - -1.8 761,749 - -1.7 761,784 - -0.1 761,784 - -0.0 761,784 - +0.2 761,824 + +0.3 761,824 + +0.6 761,824 + -0.4 761,824 + +2.4 761,824 + +0.5 761,824 + +1.3 761,825 - -1.4 761,825 - -1.4 761,825 - +1.1 761,825 - +0.3 761,825 - -0.7 761,825 - +1.0 761,859 + GFF705 0.14 -2.2 761,919 + GFF705 0.24 -3.6 761,919 + GFF705 0.24 -0.4 761,919 + GFF705 0.24 -0.6 761,919 + GFF705 0.24 -1.2 761,920 - GFF705 0.24 -2.9 761,920 - GFF705 0.24 -0.3 761,920 - GFF705 0.24 -0.0 762,057 + GFF705 0.48 -0.9 762,058 - GFF705 0.48 +0.1 762,058 - GFF705 0.48 -2.7
Or see this region's nucleotide sequence