Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF698 and GFF699 are separated by 77 nucleotides GFF699 and GFF700 are separated by 34 nucleotides
GFF698 - Transcriptional regulator, LysR family, at 753,322 to 754,206
GFF698
GFF699 - ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 754,284 to 755,006
GFF699
GFF700 - ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) / ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 755,041 to 756,987
GFF700
Position (kb) 754
755
756 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 753.377 kb on + strand at 753.377 kb on + strand at 753.377 kb on + strand at 753.377 kb on + strand at 753.377 kb on + strand at 753.377 kb on + strand at 753.377 kb on + strand at 753.377 kb on + strand at 753.377 kb on + strand at 753.377 kb on + strand at 753.377 kb on + strand at 753.377 kb on + strand at 753.377 kb on + strand at 753.378 kb on - strand at 753.378 kb on - strand at 753.378 kb on - strand at 753.378 kb on - strand at 753.378 kb on - strand at 753.378 kb on - strand at 753.378 kb on - strand at 753.378 kb on - strand at 753.378 kb on - strand at 753.378 kb on - strand at 753.378 kb on - strand at 753.378 kb on - strand at 753.378 kb on - strand at 753.378 kb on - strand at 753.378 kb on - strand at 753.378 kb on - strand at 753.378 kb on - strand at 753.393 kb on - strand at 753.472 kb on + strand, within GFF698 at 753.472 kb on + strand, within GFF698 at 753.473 kb on - strand, within GFF698 at 753.491 kb on + strand, within GFF698 at 753.491 kb on + strand, within GFF698 at 753.491 kb on + strand, within GFF698 at 753.491 kb on + strand, within GFF698 at 753.491 kb on + strand, within GFF698 at 753.491 kb on + strand, within GFF698 at 753.491 kb on + strand, within GFF698 at 753.492 kb on - strand, within GFF698 at 753.492 kb on - strand, within GFF698 at 753.492 kb on - strand, within GFF698 at 753.492 kb on - strand, within GFF698 at 753.492 kb on - strand, within GFF698 at 753.492 kb on - strand, within GFF698 at 753.492 kb on - strand, within GFF698 at 753.492 kb on - strand, within GFF698 at 753.612 kb on - strand, within GFF698 at 753.623 kb on + strand, within GFF698 at 753.623 kb on + strand, within GFF698 at 753.623 kb on + strand, within GFF698 at 753.624 kb on - strand, within GFF698 at 753.624 kb on - strand, within GFF698 at 753.624 kb on - strand, within GFF698 at 753.624 kb on - strand, within GFF698 at 753.695 kb on + strand, within GFF698 at 753.695 kb on + strand, within GFF698 at 753.696 kb on - strand, within GFF698 at 753.696 kb on - strand, within GFF698 at 753.696 kb on - strand, within GFF698 at 753.696 kb on - strand, within GFF698 at 753.696 kb on - strand, within GFF698 at 753.696 kb on - strand, within GFF698 at 753.696 kb on - strand, within GFF698 at 753.791 kb on + strand, within GFF698 at 753.855 kb on - strand, within GFF698 at 753.866 kb on + strand, within GFF698 at 753.866 kb on + strand, within GFF698 at 753.866 kb on + strand, within GFF698 at 753.867 kb on - strand, within GFF698 at 754.010 kb on + strand, within GFF698 at 754.271 kb on + strand at 754.285 kb on + strand at 754.285 kb on + strand at 754.285 kb on + strand at 754.303 kb on + strand at 754.303 kb on + strand at 754.303 kb on + strand at 754.303 kb on + strand at 754.303 kb on + strand at 754.304 kb on - strand at 754.382 kb on - strand, within GFF699 at 754.382 kb on - strand, within GFF699 at 754.382 kb on - strand, within GFF699 at 754.382 kb on - strand, within GFF699 at 754.382 kb on - strand, within GFF699 at 754.795 kb on + strand, within GFF699 at 754.795 kb on + strand, within GFF699 at 754.795 kb on + strand, within GFF699 at 754.795 kb on + strand, within GFF699 at 754.796 kb on - strand, within GFF699 at 754.796 kb on - strand, within GFF699 at 754.796 kb on - strand, within GFF699 at 754.796 kb on - strand, within GFF699 at 754.975 kb on + strand at 755.060 kb on + strand at 755.060 kb on + strand at 755.060 kb on + strand at 755.060 kb on + strand at 755.061 kb on - strand at 755.061 kb on - strand at 755.645 kb on + strand, within GFF700 at 755.645 kb on + strand, within GFF700 at 755.645 kb on + strand, within GFF700 at 755.645 kb on + strand, within GFF700 at 755.645 kb on + strand, within GFF700 at 755.645 kb on + strand, within GFF700 at 755.645 kb on + strand, within GFF700 at 755.645 kb on + strand, within GFF700 at 755.646 kb on - strand, within GFF700 at 755.646 kb on - strand, within GFF700 at 755.646 kb on - strand, within GFF700 at 755.646 kb on - strand, within GFF700 at 755.646 kb on - strand, within GFF700 at 755.816 kb on + strand, within GFF700 at 755.816 kb on + strand, within GFF700 at 755.817 kb on - strand, within GFF700 at 755.817 kb on - strand, within GFF700 at 755.817 kb on - strand, within GFF700 at 755.936 kb on + strand, within GFF700 at 755.936 kb on + strand, within GFF700 at 755.936 kb on + strand, within GFF700 at 755.937 kb on - strand, within GFF700 at 755.937 kb on - strand, within GFF700 at 755.939 kb on + strand, within GFF700 at 755.939 kb on + strand, within GFF700 at 755.939 kb on + strand, within GFF700 at 755.939 kb on + strand, within GFF700 at 755.939 kb on + strand, within GFF700 at 755.939 kb on + strand, within GFF700 at 755.940 kb on - strand, within GFF700 at 755.940 kb on - strand, within GFF700 at 755.940 kb on - strand, within GFF700 at 755.940 kb on - strand, within GFF700 at 755.940 kb on - strand, within GFF700 at 755.940 kb on - strand, within GFF700 at 755.940 kb on - strand, within GFF700 at 755.940 kb on - strand, within GFF700 at 755.940 kb on - strand, within GFF700 at 755.940 kb on - strand, within GFF700 at 755.940 kb on - strand, within GFF700 at 755.940 kb on - strand, within GFF700 at 755.940 kb on - strand, within GFF700 at 755.940 kb on - strand, within GFF700 at 755.940 kb on - strand, within GFF700 at 755.970 kb on + strand, within GFF700
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 753,377 + +0.1 753,377 + +0.7 753,377 + +0.3 753,377 + +0.1 753,377 + -2.1 753,377 + -1.0 753,377 + -0.9 753,377 + +0.4 753,377 + +1.7 753,377 + +0.8 753,377 + -1.1 753,377 + -0.5 753,377 + +2.0 753,378 - +0.6 753,378 - -1.0 753,378 - -0.4 753,378 - +0.3 753,378 - -2.2 753,378 - -0.9 753,378 - -1.4 753,378 - -1.6 753,378 - -1.9 753,378 - -0.3 753,378 - +0.4 753,378 - -1.6 753,378 - +1.6 753,378 - -1.0 753,378 - +1.2 753,378 - -1.0 753,378 - +0.6 753,393 - -0.6 753,472 + GFF698 0.17 -0.1 753,472 + GFF698 0.17 +1.2 753,473 - GFF698 0.17 -0.8 753,491 + GFF698 0.19 -0.4 753,491 + GFF698 0.19 -0.0 753,491 + GFF698 0.19 -1.5 753,491 + GFF698 0.19 +0.5 753,491 + GFF698 0.19 +0.1 753,491 + GFF698 0.19 +0.8 753,491 + GFF698 0.19 +0.4 753,492 - GFF698 0.19 -0.9 753,492 - GFF698 0.19 -2.5 753,492 - GFF698 0.19 +1.9 753,492 - GFF698 0.19 +0.8 753,492 - GFF698 0.19 -2.1 753,492 - GFF698 0.19 +0.5 753,492 - GFF698 0.19 -1.0 753,492 - GFF698 0.19 -2.9 753,612 - GFF698 0.33 -0.7 753,623 + GFF698 0.34 -1.0 753,623 + GFF698 0.34 -2.1 753,623 + GFF698 0.34 -2.1 753,624 - GFF698 0.34 +0.3 753,624 - GFF698 0.34 -1.1 753,624 - GFF698 0.34 -0.0 753,624 - GFF698 0.34 -1.1 753,695 + GFF698 0.42 -0.7 753,695 + GFF698 0.42 -0.9 753,696 - GFF698 0.42 +1.0 753,696 - GFF698 0.42 -0.0 753,696 - GFF698 0.42 -0.1 753,696 - GFF698 0.42 +0.8 753,696 - GFF698 0.42 -0.3 753,696 - GFF698 0.42 -2.6 753,696 - GFF698 0.42 +0.2 753,791 + GFF698 0.53 +0.8 753,855 - GFF698 0.60 -1.0 753,866 + GFF698 0.61 +0.6 753,866 + GFF698 0.61 -1.9 753,866 + GFF698 0.61 -0.7 753,867 - GFF698 0.62 +0.6 754,010 + GFF698 0.78 -0.7 754,271 + -2.7 754,285 + -1.0 754,285 + -0.8 754,285 + -0.3 754,303 + -2.7 754,303 + -0.4 754,303 + -0.7 754,303 + -0.7 754,303 + -1.3 754,304 - -2.5 754,382 - GFF699 0.14 -2.2 754,382 - GFF699 0.14 -0.5 754,382 - GFF699 0.14 -1.2 754,382 - GFF699 0.14 -0.0 754,382 - GFF699 0.14 -1.0 754,795 + GFF699 0.71 -0.7 754,795 + GFF699 0.71 -3.1 754,795 + GFF699 0.71 -3.6 754,795 + GFF699 0.71 -2.2 754,796 - GFF699 0.71 -1.9 754,796 - GFF699 0.71 -3.5 754,796 - GFF699 0.71 -1.7 754,796 - GFF699 0.71 +0.6 754,975 + -0.0 755,060 + -0.9 755,060 + -3.2 755,060 + -1.4 755,060 + -1.5 755,061 - -1.2 755,061 - +1.1 755,645 + GFF700 0.31 -4.9 755,645 + GFF700 0.31 -2.1 755,645 + GFF700 0.31 +1.1 755,645 + GFF700 0.31 -0.4 755,645 + GFF700 0.31 -0.7 755,645 + GFF700 0.31 -1.6 755,645 + GFF700 0.31 -1.4 755,645 + GFF700 0.31 +0.2 755,646 - GFF700 0.31 -1.1 755,646 - GFF700 0.31 -2.6 755,646 - GFF700 0.31 -2.9 755,646 - GFF700 0.31 -0.3 755,646 - GFF700 0.31 -0.2 755,816 + GFF700 0.40 -0.1 755,816 + GFF700 0.40 -1.7 755,817 - GFF700 0.40 -2.9 755,817 - GFF700 0.40 -0.2 755,817 - GFF700 0.40 -3.4 755,936 + GFF700 0.46 -2.0 755,936 + GFF700 0.46 +0.3 755,936 + GFF700 0.46 -2.3 755,937 - GFF700 0.46 -2.1 755,937 - GFF700 0.46 -2.9 755,939 + GFF700 0.46 -2.7 755,939 + GFF700 0.46 -1.6 755,939 + GFF700 0.46 +1.2 755,939 + GFF700 0.46 -2.9 755,939 + GFF700 0.46 -1.6 755,939 + GFF700 0.46 -0.7 755,940 - GFF700 0.46 -2.5 755,940 - GFF700 0.46 -0.0 755,940 - GFF700 0.46 -1.6 755,940 - GFF700 0.46 -0.3 755,940 - GFF700 0.46 -2.3 755,940 - GFF700 0.46 -1.4 755,940 - GFF700 0.46 +1.8 755,940 - GFF700 0.46 -0.3 755,940 - GFF700 0.46 -2.9 755,940 - GFF700 0.46 -0.1 755,940 - GFF700 0.46 -0.7 755,940 - GFF700 0.46 -2.4 755,940 - GFF700 0.46 +0.7 755,940 - GFF700 0.46 -0.8 755,940 - GFF700 0.46 -2.0 755,970 + GFF700 0.48 -0.3
Or see this region's nucleotide sequence