Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6955 and GFF6956 are separated by 260 nucleotides GFF6956 and GFF6957 are separated by 2 nucleotides GFF6957 and GFF6958 overlap by 4 nucleotides GFF6958 and GFF6959 overlap by 4 nucleotides GFF6959 and GFF6960 are separated by 34 nucleotides
GFF6955 - no description, at 30,730 to 30,864
GFF6955
GFF6956 - Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein, at 31,125 to 31,820
GFF6956
GFF6957 - Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22), at 31,823 to 33,229
GFF6957
GFF6958 - no description, at 33,226 to 33,492
GFF6958
GFF6959 - Putative analog of CcoH, COG3198, at 33,489 to 33,770
GFF6959
GFF6960 - Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation, at 33,805 to 35,232
GFF6960
Position (kb) 31
32
33
34 Strain fitness (log2 ratio) -2
-1
0
1
2 at 31.637 kb on - strand, within GFF6956 at 31.863 kb on + strand at 32.184 kb on + strand, within GFF6957 at 32.185 kb on - strand, within GFF6957 at 32.341 kb on - strand, within GFF6957 at 32.346 kb on + strand, within GFF6957 at 32.347 kb on - strand, within GFF6957 at 32.466 kb on + strand, within GFF6957 at 32.466 kb on + strand, within GFF6957 at 32.467 kb on - strand, within GFF6957 at 32.473 kb on - strand, within GFF6957 at 32.556 kb on + strand, within GFF6957 at 32.557 kb on - strand, within GFF6957 at 32.931 kb on + strand, within GFF6957 at 32.931 kb on + strand, within GFF6957 at 32.931 kb on + strand, within GFF6957 at 32.991 kb on + strand, within GFF6957 at 32.991 kb on + strand, within GFF6957 at 32.991 kb on + strand, within GFF6957 at 32.991 kb on + strand, within GFF6957 at 32.994 kb on + strand, within GFF6957 at 33.027 kb on + strand, within GFF6957 at 33.027 kb on + strand, within GFF6957 at 33.028 kb on - strand, within GFF6957 at 33.028 kb on - strand, within GFF6957 at 33.028 kb on - strand, within GFF6957 at 33.132 kb on + strand at 33.132 kb on + strand at 33.141 kb on + strand at 33.347 kb on + strand, within GFF6958 at 33.347 kb on + strand, within GFF6958 at 33.347 kb on + strand, within GFF6958 at 33.347 kb on + strand, within GFF6958 at 33.348 kb on - strand, within GFF6958 at 33.348 kb on - strand, within GFF6958 at 33.348 kb on - strand, within GFF6958 at 33.619 kb on + strand, within GFF6959 at 33.620 kb on - strand, within GFF6959 at 34.017 kb on - strand, within GFF6960 at 34.017 kb on - strand, within GFF6960 at 34.059 kb on - strand, within GFF6960
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 31,637 - GFF6956 0.74 -0.6 31,863 + -0.8 32,184 + GFF6957 0.26 +0.8 32,185 - GFF6957 0.26 -0.4 32,341 - GFF6957 0.37 +1.8 32,346 + GFF6957 0.37 -2.2 32,347 - GFF6957 0.37 +0.2 32,466 + GFF6957 0.46 -1.8 32,466 + GFF6957 0.46 -2.4 32,467 - GFF6957 0.46 -0.7 32,473 - GFF6957 0.46 +1.3 32,556 + GFF6957 0.52 +0.2 32,557 - GFF6957 0.52 +1.4 32,931 + GFF6957 0.79 +0.6 32,931 + GFF6957 0.79 +1.2 32,931 + GFF6957 0.79 -0.9 32,991 + GFF6957 0.83 -2.3 32,991 + GFF6957 0.83 -1.2 32,991 + GFF6957 0.83 -1.9 32,991 + GFF6957 0.83 +2.6 32,994 + GFF6957 0.83 +1.3 33,027 + GFF6957 0.86 -0.5 33,027 + GFF6957 0.86 -2.7 33,028 - GFF6957 0.86 -1.0 33,028 - GFF6957 0.86 -1.2 33,028 - GFF6957 0.86 +0.3 33,132 + -1.1 33,132 + +0.8 33,141 + +0.5 33,347 + GFF6958 0.45 +0.8 33,347 + GFF6958 0.45 +0.5 33,347 + GFF6958 0.45 -0.0 33,347 + GFF6958 0.45 +2.0 33,348 - GFF6958 0.46 -1.2 33,348 - GFF6958 0.46 +0.2 33,348 - GFF6958 0.46 -0.1 33,619 + GFF6959 0.46 +1.0 33,620 - GFF6959 0.46 -0.8 34,017 - GFF6960 0.15 -2.2 34,017 - GFF6960 0.15 -1.5 34,059 - GFF6960 0.18 +0.2
Or see this region's nucleotide sequence