Strain Fitness in Variovorax sp. SCN45 around GFF6887

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
20,084	+		GFF6886	0.42	+1.5
20,084	+		GFF6886	0.42	+0.2
20,084	+		GFF6886	0.42	+1.2
20,085	-		GFF6886	0.42	-0.4
20,147	+		GFF6886	0.47	+0.2
20,147	+		GFF6886	0.47	-0.6
20,148	-		GFF6886	0.47	+0.4
20,148	-		GFF6886	0.47	-0.4
20,148	-		GFF6886	0.47	-0.6
20,148	-		GFF6886	0.47	-0.3
20,423	+		GFF6886	0.66	+1.7
20,423	+		GFF6886	0.66	-1.5
20,423	+		GFF6886	0.66	+0.1
20,454	+		GFF6886	0.68	-2.1
20,454	+		GFF6886	0.68	-0.4
20,454	+		GFF6886	0.68	-0.4
20,454	+		GFF6886	0.68	+0.2
20,454	+		GFF6886	0.68	-1.7
20,455	-		GFF6886	0.68	-1.8
20,455	-		GFF6886	0.68	-1.5
20,455	-		GFF6886	0.68	-0.5
20,455	-		GFF6886	0.68	+1.4
20,702	+		GFF6886	0.85	+1.1
20,702	+		GFF6886	0.85	-1.8
20,702	+		GFF6886	0.85	-1.4
20,703	-		GFF6886	0.85	+1.9
20,756	+		GFF6886	0.89	-1.6
20,756	+		GFF6886	0.89	-1.2
20,757	-		GFF6886	0.89	-0.6
20,757	-		GFF6886	0.89	-0.3
20,757	-		GFF6886	0.89	-0.5
20,774	+				-0.1
20,775	-				-2.8
20,775	-				+1.5
20,927	-				-2.8
20,971	+				-1.8
20,971	+				-1.3
20,971	+				+1.5
21,000	+				-2.0
21,000	+				-0.1
21,001	-				-0.8
21,001	-				-4.3
21,011	+				-1.4
21,011	+				-1.1
21,011	+				-2.3
21,012	-				-3.3
21,012	-				-1.9
21,026	+				-1.5
21,026	+				-0.1
21,027	-				-0.8
21,027	-				-3.3
21,282	+		GFF6887	0.41	-1.3
21,283	-		GFF6887	0.41	+0.8
21,283	-		GFF6887	0.41	-0.1
21,283	-		GFF6887	0.41	-0.8
21,283	-		GFF6887	0.41	-1.4
21,283	-		GFF6887	0.41	-2.7
21,283	-		GFF6887	0.41	-1.4
21,283	-		GFF6887	0.41	-1.5
21,283	-		GFF6887	0.41	+0.6
21,300	+		GFF6887	0.43	+0.2
21,300	+		GFF6887	0.43	+0.1
21,300	+		GFF6887	0.43	-2.6
21,300	+		GFF6887	0.43	-1.4
21,300	+		GFF6887	0.43	-0.4
21,300	+		GFF6887	0.43	+0.6
21,300	+		GFF6887	0.43	-1.3
21,300	+		GFF6887	0.43	-1.4
21,300	+		GFF6887	0.43	-2.2
21,300	+		GFF6887	0.43	-0.6
21,300	+		GFF6887	0.43	-0.1
21,300	+		GFF6887	0.43	+0.3
21,300	+		GFF6887	0.43	+1.6
21,300	+		GFF6887	0.43	-0.5
21,301	-		GFF6887	0.44	+1.2
21,301	-		GFF6887	0.44	-1.0
21,301	-		GFF6887	0.44	-0.8
21,301	-		GFF6887	0.44	-3.0
21,301	-		GFF6887	0.44	-3.2
21,301	-		GFF6887	0.44	-0.2
21,301	-		GFF6887	0.44	-0.4
21,301	-		GFF6887	0.44	-2.6
21,301	-		GFF6887	0.44	-1.8
21,301	-		GFF6887	0.44	-1.8
21,301	-		GFF6887	0.44	-2.9
21,301	-		GFF6887	0.44	+1.5
21,301	-		GFF6887	0.44	-0.1
21,519	+		GFF6887	0.80	-0.1
21,519	+		GFF6887	0.80	-0.6
21,519	+		GFF6887	0.80	+0.6
21,520	-		GFF6887	0.80	-2.6
21,520	-		GFF6887	0.80	-1.0
21,520	-		GFF6887	0.80	-0.8
21,520	-		GFF6887	0.80	-3.1
21,520	-		GFF6887	0.80	-0.6
21,634	+				-2.2
21,634	+				+0.3
21,634	+				-1.4
21,634	+				-0.3
21,634	+				-1.2
21,634	+				-0.5
21,634	+				-1.5
21,634	+				-1.6
21,634	+				-1.7
21,634	+				-1.0
21,634	+				+1.1
21,634	+				-1.3
21,634	+				-0.6
21,634	+				-0.1
21,635	-				-1.1
21,635	-				+0.3
21,635	-				-1.5
21,635	-				+0.0
21,635	-				-0.4
21,635	-				-2.6
21,635	-				+0.6
21,635	-				+0.1
21,635	-				-0.9
21,635	-				+0.3
21,917	+		GFF6888	0.29	-1.1
21,918	-		GFF6888	0.29	-1.8
21,918	-		GFF6888	0.29	-0.8
22,166	+		GFF6888	0.54	-0.2
22,166	+		GFF6888	0.54	-1.5
22,166	+		GFF6888	0.54	-3.8
22,166	+		GFF6888	0.54	-1.8
22,167	-		GFF6888	0.54	-2.3
22,167	-		GFF6888	0.54	-0.5
22,167	-		GFF6888	0.54	-0.5
22,167	-		GFF6888	0.54	-1.8
22,167	-		GFF6888	0.54	+1.8
22,167	-		GFF6888	0.54	-3.2
22,172	+		GFF6888	0.55	+1.2
22,172	+		GFF6888	0.55	-1.5
22,172	+		GFF6888	0.55	+0.5
22,172	+		GFF6888	0.55	+0.6
22,172	+		GFF6888	0.55	+1.4
22,172	+		GFF6888	0.55	-0.4
22,172	+		GFF6888	0.55	+0.2
22,172	+		GFF6888	0.55	-3.3
22,172	+		GFF6888	0.55	-2.4
22,173	-		GFF6888	0.55	-0.6
22,173	-		GFF6888	0.55	+1.7
22,173	-		GFF6888	0.55	-2.3
22,173	-		GFF6888	0.55	-0.6
22,173	-		GFF6888	0.55	-3.1
22,173	-		GFF6888	0.55	-1.7
22,173	-		GFF6888	0.55	-0.8
22,173	-		GFF6888	0.55	-3.6
22,258	+		GFF6888	0.63	+0.2
22,316	+		GFF6888	0.69	-1.7
22,316	+		GFF6888	0.69	+2.7
22,316	+		GFF6888	0.69	-1.5
22,316	+		GFF6888	0.69	-1.7
22,316	+		GFF6888	0.69	-1.7
22,317	-		GFF6888	0.69	+0.3
22,317	-		GFF6888	0.69	-0.8
22,317	-		GFF6888	0.69	-1.3
22,317	-		GFF6888	0.69	-0.3
22,317	-		GFF6888	0.69	-0.3