Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6884 and GFF6885 are separated by 33 nucleotides GFF6885 and GFF6886 are separated by 91 nucleotides
GFF6884 - FIG00932717: hypothetical protein, at 17,301 to 18,593
GFF6884
GFF6885 - hypothetical protein, at 18,627 to 19,379
GFF6885
GFF6886 - DNA-binding transcriptional regulator, MocR family / aminotransferase domain, at 19,471 to 20,916
GFF6886
Position (kb) 18
19
20 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 18.130 kb on + strand, within GFF6884 at 18.130 kb on + strand, within GFF6884 at 18.130 kb on + strand, within GFF6884 at 18.130 kb on + strand, within GFF6884 at 18.131 kb on - strand, within GFF6884 at 18.131 kb on - strand, within GFF6884 at 18.131 kb on - strand, within GFF6884 at 18.213 kb on - strand, within GFF6884 at 18.213 kb on - strand, within GFF6884 at 18.274 kb on + strand, within GFF6884 at 18.274 kb on + strand, within GFF6884 at 18.274 kb on + strand, within GFF6884 at 18.274 kb on + strand, within GFF6884 at 18.274 kb on + strand, within GFF6884 at 18.275 kb on - strand, within GFF6884 at 18.275 kb on - strand, within GFF6884 at 18.275 kb on - strand, within GFF6884 at 18.275 kb on - strand, within GFF6884 at 18.328 kb on + strand, within GFF6884 at 18.328 kb on + strand, within GFF6884 at 18.329 kb on - strand, within GFF6884 at 18.329 kb on - strand, within GFF6884 at 18.329 kb on - strand, within GFF6884 at 18.436 kb on + strand, within GFF6884 at 18.437 kb on - strand, within GFF6884 at 18.451 kb on + strand, within GFF6884 at 18.451 kb on + strand, within GFF6884 at 18.451 kb on + strand, within GFF6884 at 18.451 kb on + strand, within GFF6884 at 18.451 kb on + strand, within GFF6884 at 18.451 kb on + strand, within GFF6884 at 18.451 kb on + strand, within GFF6884 at 18.451 kb on + strand, within GFF6884 at 18.451 kb on + strand, within GFF6884 at 18.451 kb on + strand, within GFF6884 at 18.451 kb on + strand, within GFF6884 at 18.451 kb on + strand, within GFF6884 at 18.451 kb on + strand, within GFF6884 at 18.451 kb on + strand, within GFF6884 at 18.451 kb on + strand, within GFF6884 at 18.452 kb on - strand, within GFF6884 at 18.452 kb on - strand, within GFF6884 at 18.452 kb on - strand, within GFF6884 at 18.452 kb on - strand, within GFF6884 at 18.452 kb on - strand, within GFF6884 at 18.452 kb on - strand, within GFF6884 at 18.452 kb on - strand, within GFF6884 at 18.452 kb on - strand, within GFF6884 at 18.452 kb on - strand, within GFF6884 at 18.452 kb on - strand, within GFF6884 at 18.452 kb on - strand, within GFF6884 at 18.452 kb on - strand, within GFF6884 at 18.452 kb on - strand, within GFF6884 at 18.452 kb on - strand, within GFF6884 at 18.452 kb on - strand, within GFF6884 at 18.452 kb on - strand, within GFF6884 at 18.452 kb on - strand, within GFF6884 at 18.452 kb on - strand, within GFF6884 at 18.452 kb on - strand, within GFF6884 at 18.452 kb on - strand, within GFF6884 at 18.481 kb on + strand at 18.482 kb on - strand at 18.612 kb on + strand at 18.612 kb on + strand at 18.612 kb on + strand at 18.612 kb on + strand at 18.612 kb on + strand at 18.612 kb on + strand at 18.612 kb on + strand at 18.612 kb on + strand at 18.612 kb on + strand at 18.612 kb on + strand at 18.612 kb on + strand at 18.613 kb on - strand at 18.613 kb on - strand at 18.613 kb on - strand at 18.613 kb on - strand at 18.613 kb on - strand at 18.613 kb on - strand at 18.613 kb on - strand at 18.614 kb on + strand at 18.614 kb on + strand at 18.614 kb on + strand at 18.615 kb on - strand at 18.615 kb on - strand at 18.615 kb on - strand at 18.615 kb on - strand at 18.615 kb on - strand at 18.620 kb on + strand at 18.620 kb on + strand at 18.620 kb on + strand at 18.620 kb on + strand at 18.620 kb on + strand at 18.620 kb on + strand at 18.620 kb on + strand at 18.620 kb on + strand at 18.620 kb on + strand at 18.620 kb on + strand at 18.620 kb on + strand at 18.620 kb on + strand at 18.620 kb on + strand at 18.620 kb on + strand at 18.620 kb on + strand at 18.620 kb on + strand at 18.620 kb on + strand at 18.620 kb on + strand at 18.620 kb on + strand at 18.620 kb on + strand at 18.620 kb on + strand at 18.621 kb on - strand at 18.621 kb on - strand at 18.621 kb on - strand at 18.621 kb on - strand at 18.621 kb on - strand at 18.621 kb on - strand at 18.621 kb on - strand at 18.621 kb on - strand at 18.621 kb on - strand at 18.621 kb on - strand at 18.621 kb on - strand at 18.621 kb on - strand at 18.621 kb on - strand at 18.621 kb on - strand at 19.192 kb on + strand, within GFF6885 at 19.192 kb on + strand, within GFF6885 at 19.193 kb on - strand, within GFF6885 at 19.193 kb on - strand, within GFF6885 at 19.420 kb on + strand at 19.420 kb on + strand at 19.420 kb on + strand at 19.420 kb on + strand at 19.420 kb on + strand at 19.420 kb on + strand at 19.421 kb on - strand at 19.421 kb on - strand at 19.421 kb on - strand at 19.421 kb on - strand at 19.421 kb on - strand at 19.462 kb on + strand at 19.463 kb on - strand at 19.463 kb on - strand at 19.598 kb on + strand at 19.598 kb on + strand at 19.598 kb on + strand at 19.598 kb on + strand at 19.598 kb on + strand at 19.598 kb on + strand at 19.598 kb on + strand at 19.599 kb on - strand at 19.599 kb on - strand at 19.599 kb on - strand at 19.599 kb on - strand at 19.599 kb on - strand at 19.937 kb on + strand, within GFF6886 at 19.937 kb on + strand, within GFF6886 at 19.937 kb on + strand, within GFF6886 at 19.937 kb on + strand, within GFF6886 at 19.937 kb on + strand, within GFF6886 at 19.937 kb on + strand, within GFF6886 at 19.937 kb on + strand, within GFF6886 at 19.937 kb on + strand, within GFF6886 at 19.937 kb on + strand, within GFF6886 at 19.937 kb on + strand, within GFF6886 at 19.937 kb on + strand, within GFF6886 at 19.937 kb on + strand, within GFF6886 at 19.937 kb on + strand, within GFF6886 at 19.937 kb on + strand, within GFF6886 at 19.937 kb on + strand, within GFF6886 at 19.937 kb on + strand, within GFF6886 at 19.937 kb on + strand, within GFF6886 at 19.937 kb on + strand, within GFF6886 at 19.938 kb on - strand, within GFF6886 at 19.938 kb on - strand, within GFF6886 at 19.938 kb on - strand, within GFF6886 at 19.938 kb on - strand, within GFF6886 at 19.938 kb on - strand, within GFF6886 at 19.938 kb on - strand, within GFF6886 at 19.938 kb on - strand, within GFF6886 at 19.938 kb on - strand, within GFF6886 at 19.938 kb on - strand, within GFF6886 at 19.938 kb on - strand, within GFF6886 at 19.938 kb on - strand, within GFF6886 at 19.938 kb on - strand, within GFF6886 at 19.938 kb on - strand, within GFF6886 at 19.938 kb on - strand, within GFF6886 at 19.938 kb on - strand, within GFF6886 at 19.938 kb on - strand, within GFF6886 at 20.003 kb on + strand, within GFF6886 at 20.003 kb on + strand, within GFF6886 at 20.003 kb on + strand, within GFF6886 at 20.003 kb on + strand, within GFF6886 at 20.003 kb on + strand, within GFF6886 at 20.003 kb on + strand, within GFF6886 at 20.003 kb on + strand, within GFF6886 at 20.003 kb on + strand, within GFF6886 at 20.003 kb on + strand, within GFF6886 at 20.003 kb on + strand, within GFF6886 at 20.003 kb on + strand, within GFF6886 at 20.003 kb on + strand, within GFF6886 at 20.003 kb on + strand, within GFF6886 at 20.003 kb on + strand, within GFF6886 at 20.003 kb on + strand, within GFF6886 at 20.003 kb on + strand, within GFF6886 at 20.003 kb on + strand, within GFF6886 at 20.003 kb on + strand, within GFF6886 at 20.003 kb on + strand, within GFF6886 at 20.003 kb on + strand, within GFF6886 at 20.003 kb on + strand, within GFF6886 at 20.003 kb on + strand, within GFF6886 at 20.003 kb on + strand, within GFF6886 at 20.004 kb on - strand, within GFF6886 at 20.004 kb on - strand, within GFF6886 at 20.004 kb on - strand, within GFF6886 at 20.004 kb on - strand, within GFF6886 at 20.004 kb on - strand, within GFF6886 at 20.004 kb on - strand, within GFF6886 at 20.004 kb on - strand, within GFF6886 at 20.004 kb on - strand, within GFF6886 at 20.004 kb on - strand, within GFF6886 at 20.004 kb on - strand, within GFF6886 at 20.004 kb on - strand, within GFF6886 at 20.004 kb on - strand, within GFF6886 at 20.004 kb on - strand, within GFF6886 at 20.004 kb on - strand, within GFF6886 at 20.004 kb on - strand, within GFF6886 at 20.004 kb on - strand, within GFF6886 at 20.004 kb on - strand, within GFF6886 at 20.004 kb on - strand, within GFF6886 at 20.004 kb on - strand, within GFF6886 at 20.004 kb on - strand, within GFF6886 at 20.004 kb on - strand, within GFF6886 at 20.033 kb on + strand, within GFF6886 at 20.033 kb on + strand, within GFF6886 at 20.033 kb on + strand, within GFF6886 at 20.033 kb on + strand, within GFF6886 at 20.033 kb on + strand, within GFF6886 at 20.034 kb on - strand, within GFF6886 at 20.034 kb on - strand, within GFF6886 at 20.034 kb on - strand, within GFF6886 at 20.034 kb on - strand, within GFF6886 at 20.034 kb on - strand, within GFF6886 at 20.034 kb on - strand, within GFF6886 at 20.084 kb on + strand, within GFF6886 at 20.084 kb on + strand, within GFF6886 at 20.084 kb on + strand, within GFF6886 at 20.085 kb on - strand, within GFF6886 at 20.147 kb on + strand, within GFF6886 at 20.147 kb on + strand, within GFF6886 at 20.148 kb on - strand, within GFF6886 at 20.148 kb on - strand, within GFF6886 at 20.148 kb on - strand, within GFF6886 at 20.148 kb on - strand, within GFF6886
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 18,130 + GFF6884 0.64 -0.6 18,130 + GFF6884 0.64 -3.5 18,130 + GFF6884 0.64 -1.1 18,130 + GFF6884 0.64 -0.8 18,131 - GFF6884 0.64 +0.6 18,131 - GFF6884 0.64 -3.5 18,131 - GFF6884 0.64 +0.7 18,213 - GFF6884 0.71 +0.8 18,213 - GFF6884 0.71 -0.7 18,274 + GFF6884 0.75 +0.9 18,274 + GFF6884 0.75 +1.0 18,274 + GFF6884 0.75 -0.4 18,274 + GFF6884 0.75 -0.3 18,274 + GFF6884 0.75 -3.5 18,275 - GFF6884 0.75 -0.1 18,275 - GFF6884 0.75 +0.2 18,275 - GFF6884 0.75 -0.2 18,275 - GFF6884 0.75 +1.5 18,328 + GFF6884 0.79 +0.7 18,328 + GFF6884 0.79 -0.2 18,329 - GFF6884 0.80 -1.3 18,329 - GFF6884 0.80 +1.1 18,329 - GFF6884 0.80 +0.0 18,436 + GFF6884 0.88 -1.1 18,437 - GFF6884 0.88 -4.2 18,451 + GFF6884 0.89 -1.3 18,451 + GFF6884 0.89 -2.6 18,451 + GFF6884 0.89 -1.6 18,451 + GFF6884 0.89 -3.6 18,451 + GFF6884 0.89 +0.1 18,451 + GFF6884 0.89 +1.2 18,451 + GFF6884 0.89 -2.5 18,451 + GFF6884 0.89 -0.6 18,451 + GFF6884 0.89 +1.3 18,451 + GFF6884 0.89 +0.5 18,451 + GFF6884 0.89 -0.4 18,451 + GFF6884 0.89 +1.2 18,451 + GFF6884 0.89 -1.9 18,451 + GFF6884 0.89 +0.9 18,451 + GFF6884 0.89 -1.4 18,452 - GFF6884 0.89 -0.1 18,452 - GFF6884 0.89 -0.8 18,452 - GFF6884 0.89 -4.3 18,452 - GFF6884 0.89 -0.6 18,452 - GFF6884 0.89 -1.8 18,452 - GFF6884 0.89 -0.2 18,452 - GFF6884 0.89 -2.3 18,452 - GFF6884 0.89 +1.8 18,452 - GFF6884 0.89 +1.0 18,452 - GFF6884 0.89 +0.9 18,452 - GFF6884 0.89 -0.8 18,452 - GFF6884 0.89 -0.2 18,452 - GFF6884 0.89 +1.2 18,452 - GFF6884 0.89 -1.4 18,452 - GFF6884 0.89 -2.3 18,452 - GFF6884 0.89 -0.1 18,452 - GFF6884 0.89 -1.8 18,452 - GFF6884 0.89 -3.0 18,452 - GFF6884 0.89 -0.8 18,452 - GFF6884 0.89 -0.7 18,481 + -0.1 18,482 - -2.7 18,612 + -2.1 18,612 + +0.4 18,612 + +0.8 18,612 + -0.3 18,612 + +0.1 18,612 + +0.2 18,612 + -1.0 18,612 + -2.0 18,612 + -2.2 18,612 + -0.2 18,612 + -1.0 18,613 - -1.6 18,613 - +0.1 18,613 - -0.5 18,613 - -3.3 18,613 - -2.2 18,613 - -3.4 18,613 - -0.8 18,614 + +0.4 18,614 + -0.7 18,614 + +0.3 18,615 - +0.3 18,615 - -2.6 18,615 - -1.0 18,615 - -2.9 18,615 - +0.8 18,620 + -0.1 18,620 + -1.7 18,620 + +0.2 18,620 + -1.5 18,620 + +0.2 18,620 + +1.5 18,620 + +1.2 18,620 + +1.3 18,620 + -0.4 18,620 + -0.8 18,620 + +2.2 18,620 + -0.8 18,620 + -0.7 18,620 + +0.2 18,620 + +0.9 18,620 + +0.6 18,620 + -1.1 18,620 + -1.1 18,620 + -0.8 18,620 + -0.9 18,620 + +1.1 18,621 - -0.6 18,621 - +0.5 18,621 - +1.1 18,621 - +0.2 18,621 - -2.1 18,621 - +1.1 18,621 - +1.3 18,621 - +2.6 18,621 - -3.8 18,621 - -2.3 18,621 - +1.3 18,621 - +1.0 18,621 - +0.7 18,621 - -0.1 19,192 + GFF6885 0.75 -4.1 19,192 + GFF6885 0.75 -1.5 19,193 - GFF6885 0.75 -0.2 19,193 - GFF6885 0.75 -0.2 19,420 + -1.3 19,420 + -1.7 19,420 + -1.3 19,420 + -0.0 19,420 + +0.6 19,420 + +0.2 19,421 - -1.1 19,421 - -0.7 19,421 - +0.6 19,421 - -1.1 19,421 - -0.1 19,462 + -2.4 19,463 - -1.3 19,463 - +0.7 19,598 + -0.4 19,598 + -2.4 19,598 + -3.1 19,598 + +0.6 19,598 + -1.0 19,598 + +0.1 19,598 + -1.0 19,599 - +0.6 19,599 - -0.1 19,599 - +1.6 19,599 - -2.3 19,599 - +0.8 19,937 + GFF6886 0.32 +1.3 19,937 + GFF6886 0.32 -2.2 19,937 + GFF6886 0.32 -0.6 19,937 + GFF6886 0.32 +0.7 19,937 + GFF6886 0.32 -0.8 19,937 + GFF6886 0.32 -1.3 19,937 + GFF6886 0.32 -1.0 19,937 + GFF6886 0.32 +1.7 19,937 + GFF6886 0.32 -3.8 19,937 + GFF6886 0.32 -0.8 19,937 + GFF6886 0.32 -0.6 19,937 + GFF6886 0.32 -1.0 19,937 + GFF6886 0.32 -1.0 19,937 + GFF6886 0.32 -0.6 19,937 + GFF6886 0.32 -3.1 19,937 + GFF6886 0.32 +2.8 19,937 + GFF6886 0.32 +0.2 19,937 + GFF6886 0.32 +0.3 19,938 - GFF6886 0.32 -0.3 19,938 - GFF6886 0.32 +1.0 19,938 - GFF6886 0.32 +2.2 19,938 - GFF6886 0.32 +0.5 19,938 - GFF6886 0.32 -2.3 19,938 - GFF6886 0.32 -1.2 19,938 - GFF6886 0.32 +1.2 19,938 - GFF6886 0.32 -0.8 19,938 - GFF6886 0.32 +0.2 19,938 - GFF6886 0.32 -0.9 19,938 - GFF6886 0.32 -2.0 19,938 - GFF6886 0.32 -0.1 19,938 - GFF6886 0.32 +0.9 19,938 - GFF6886 0.32 -3.1 19,938 - GFF6886 0.32 +0.2 19,938 - GFF6886 0.32 -2.2 20,003 + GFF6886 0.37 +1.2 20,003 + GFF6886 0.37 +0.8 20,003 + GFF6886 0.37 -1.4 20,003 + GFF6886 0.37 +0.3 20,003 + GFF6886 0.37 +0.6 20,003 + GFF6886 0.37 +0.2 20,003 + GFF6886 0.37 -1.5 20,003 + GFF6886 0.37 +0.4 20,003 + GFF6886 0.37 -1.0 20,003 + GFF6886 0.37 -0.6 20,003 + GFF6886 0.37 +0.4 20,003 + GFF6886 0.37 -0.5 20,003 + GFF6886 0.37 -2.5 20,003 + GFF6886 0.37 +0.5 20,003 + GFF6886 0.37 -1.4 20,003 + GFF6886 0.37 -0.1 20,003 + GFF6886 0.37 +0.6 20,003 + GFF6886 0.37 -1.5 20,003 + GFF6886 0.37 -1.3 20,003 + GFF6886 0.37 -2.2 20,003 + GFF6886 0.37 -1.0 20,003 + GFF6886 0.37 +3.2 20,003 + GFF6886 0.37 +2.4 20,004 - GFF6886 0.37 -0.6 20,004 - GFF6886 0.37 -0.1 20,004 - GFF6886 0.37 -0.8 20,004 - GFF6886 0.37 -4.1 20,004 - GFF6886 0.37 -1.1 20,004 - GFF6886 0.37 +0.7 20,004 - GFF6886 0.37 +1.0 20,004 - GFF6886 0.37 -1.0 20,004 - GFF6886 0.37 -2.0 20,004 - GFF6886 0.37 -1.0 20,004 - GFF6886 0.37 +0.3 20,004 - GFF6886 0.37 -2.4 20,004 - GFF6886 0.37 +0.2 20,004 - GFF6886 0.37 +0.4 20,004 - GFF6886 0.37 -1.7 20,004 - GFF6886 0.37 -0.7 20,004 - GFF6886 0.37 +0.1 20,004 - GFF6886 0.37 -0.8 20,004 - GFF6886 0.37 +0.9 20,004 - GFF6886 0.37 +3.0 20,004 - GFF6886 0.37 -0.0 20,033 + GFF6886 0.39 -0.8 20,033 + GFF6886 0.39 -1.5 20,033 + GFF6886 0.39 -0.5 20,033 + GFF6886 0.39 -0.9 20,033 + GFF6886 0.39 +2.6 20,034 - GFF6886 0.39 +1.0 20,034 - GFF6886 0.39 -0.6 20,034 - GFF6886 0.39 -1.1 20,034 - GFF6886 0.39 +0.3 20,034 - GFF6886 0.39 +0.2 20,034 - GFF6886 0.39 -1.3 20,084 + GFF6886 0.42 +1.5 20,084 + GFF6886 0.42 +0.2 20,084 + GFF6886 0.42 +1.2 20,085 - GFF6886 0.42 -0.4 20,147 + GFF6886 0.47 +0.2 20,147 + GFF6886 0.47 -0.6 20,148 - GFF6886 0.47 +0.4 20,148 - GFF6886 0.47 -0.4 20,148 - GFF6886 0.47 -0.6 20,148 - GFF6886 0.47 -0.3
Or see this region's nucleotide sequence