Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6832 and GFF6833 are separated by 2 nucleotides GFF6833 and GFF6834 are separated by 91 nucleotides GFF6834 and GFF6835 are separated by 67 nucleotides
GFF6832 - DnaJ-class molecular chaperone CbpA, at 18,022 to 18,984
GFF6832
GFF6833 - FIG00432169: hypothetical protein, at 18,987 to 19,304
GFF6833
GFF6834 - no description, at 19,396 to 19,851
GFF6834
GFF6835 - DNA-3-methyladenine glycosylase (EC 3.2.2.20), at 19,919 to 20,503
GFF6835
Position (kb) 18
19
20 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 18.025 kb on + strand at 18.037 kb on + strand at 18.037 kb on + strand at 18.037 kb on + strand at 18.037 kb on + strand at 18.037 kb on + strand at 18.037 kb on + strand at 18.037 kb on + strand at 18.037 kb on + strand at 18.037 kb on + strand at 18.037 kb on + strand at 18.038 kb on - strand at 18.038 kb on - strand at 18.038 kb on - strand at 18.038 kb on - strand at 18.038 kb on - strand at 18.038 kb on - strand at 18.038 kb on - strand at 18.040 kb on + strand at 18.040 kb on + strand at 18.040 kb on + strand at 18.040 kb on + strand at 18.040 kb on + strand at 18.041 kb on - strand at 18.041 kb on - strand at 18.041 kb on - strand at 18.041 kb on - strand at 18.041 kb on - strand at 18.041 kb on - strand at 18.094 kb on + strand at 18.094 kb on + strand at 18.095 kb on - strand at 18.095 kb on - strand at 18.115 kb on + strand at 18.115 kb on + strand at 18.115 kb on + strand at 18.115 kb on + strand at 18.115 kb on + strand at 18.115 kb on + strand at 18.115 kb on + strand at 18.116 kb on - strand at 18.116 kb on - strand at 18.116 kb on - strand at 18.116 kb on - strand at 18.116 kb on - strand at 18.185 kb on + strand, within GFF6832 at 18.185 kb on + strand, within GFF6832 at 18.185 kb on + strand, within GFF6832 at 18.185 kb on + strand, within GFF6832 at 18.185 kb on + strand, within GFF6832 at 18.185 kb on + strand, within GFF6832 at 18.186 kb on - strand, within GFF6832 at 18.186 kb on - strand, within GFF6832 at 18.186 kb on - strand, within GFF6832 at 18.186 kb on - strand, within GFF6832 at 18.186 kb on - strand, within GFF6832 at 18.186 kb on - strand, within GFF6832 at 18.214 kb on + strand, within GFF6832 at 18.215 kb on - strand, within GFF6832 at 18.215 kb on - strand, within GFF6832 at 18.406 kb on + strand, within GFF6832 at 18.406 kb on + strand, within GFF6832 at 18.406 kb on + strand, within GFF6832 at 18.406 kb on + strand, within GFF6832 at 18.406 kb on + strand, within GFF6832 at 18.406 kb on + strand, within GFF6832 at 18.406 kb on + strand, within GFF6832 at 18.407 kb on - strand, within GFF6832 at 18.407 kb on - strand, within GFF6832 at 18.407 kb on - strand, within GFF6832 at 18.407 kb on - strand, within GFF6832 at 18.407 kb on - strand, within GFF6832 at 18.407 kb on - strand, within GFF6832 at 18.643 kb on + strand, within GFF6832 at 18.643 kb on + strand, within GFF6832 at 18.643 kb on + strand, within GFF6832 at 18.644 kb on - strand, within GFF6832 at 18.644 kb on - strand, within GFF6832 at 18.676 kb on + strand, within GFF6832 at 18.676 kb on + strand, within GFF6832 at 18.676 kb on + strand, within GFF6832 at 18.700 kb on + strand, within GFF6832 at 18.700 kb on + strand, within GFF6832 at 18.700 kb on + strand, within GFF6832 at 18.701 kb on - strand, within GFF6832 at 18.701 kb on - strand, within GFF6832 at 18.701 kb on - strand, within GFF6832 at 18.701 kb on - strand, within GFF6832 at 18.701 kb on - strand, within GFF6832 at 18.701 kb on - strand, within GFF6832 at 18.701 kb on - strand, within GFF6832 at 18.868 kb on + strand, within GFF6832 at 18.868 kb on + strand, within GFF6832 at 18.868 kb on + strand, within GFF6832 at 18.868 kb on + strand, within GFF6832 at 18.869 kb on - strand, within GFF6832 at 18.881 kb on - strand, within GFF6832 at 18.925 kb on + strand at 18.926 kb on - strand at 19.176 kb on + strand, within GFF6833 at 19.176 kb on + strand, within GFF6833 at 19.176 kb on + strand, within GFF6833 at 19.176 kb on + strand, within GFF6833 at 19.177 kb on - strand, within GFF6833 at 19.177 kb on - strand, within GFF6833 at 19.177 kb on - strand, within GFF6833 at 19.558 kb on + strand, within GFF6834 at 19.558 kb on + strand, within GFF6834 at 19.558 kb on + strand, within GFF6834 at 19.559 kb on - strand, within GFF6834 at 19.603 kb on + strand, within GFF6834 at 19.603 kb on + strand, within GFF6834 at 19.604 kb on - strand, within GFF6834 at 19.604 kb on - strand, within GFF6834 at 19.604 kb on - strand, within GFF6834 at 19.888 kb on + strand at 19.889 kb on - strand at 19.898 kb on + strand at 19.898 kb on + strand at 19.899 kb on - strand at 19.899 kb on - strand at 19.899 kb on - strand at 19.899 kb on - strand at 19.899 kb on - strand at 19.899 kb on - strand at 19.899 kb on - strand at 19.899 kb on - strand at 19.982 kb on + strand, within GFF6835 at 19.982 kb on + strand, within GFF6835 at 19.983 kb on - strand, within GFF6835 at 19.983 kb on - strand, within GFF6835 at 20.012 kb on + strand, within GFF6835 at 20.013 kb on - strand, within GFF6835 at 20.013 kb on - strand, within GFF6835 at 20.240 kb on + strand, within GFF6835 at 20.240 kb on + strand, within GFF6835 at 20.240 kb on + strand, within GFF6835 at 20.240 kb on + strand, within GFF6835 at 20.240 kb on + strand, within GFF6835 at 20.241 kb on - strand, within GFF6835 at 20.241 kb on - strand, within GFF6835
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 18,025 + -0.6 18,037 + -0.9 18,037 + -0.0 18,037 + -0.4 18,037 + -2.2 18,037 + -2.0 18,037 + +0.1 18,037 + +0.0 18,037 + -1.3 18,037 + -2.3 18,037 + +0.6 18,038 - -1.3 18,038 - +0.2 18,038 - +0.4 18,038 - -0.1 18,038 - -3.4 18,038 - +1.4 18,038 - -2.4 18,040 + +0.7 18,040 + -1.6 18,040 + -0.5 18,040 + +0.4 18,040 + -0.2 18,041 - +0.5 18,041 - -1.7 18,041 - -1.4 18,041 - -0.4 18,041 - +0.8 18,041 - -0.9 18,094 + -2.7 18,094 + +1.4 18,095 - -1.1 18,095 - +0.9 18,115 + +0.2 18,115 + -0.7 18,115 + +2.0 18,115 + -1.4 18,115 + +1.6 18,115 + -0.7 18,115 + -0.0 18,116 - +1.9 18,116 - -1.6 18,116 - -2.1 18,116 - +1.0 18,116 - +0.1 18,185 + GFF6832 0.17 +1.4 18,185 + GFF6832 0.17 +0.1 18,185 + GFF6832 0.17 -0.5 18,185 + GFF6832 0.17 -3.7 18,185 + GFF6832 0.17 -1.4 18,185 + GFF6832 0.17 -2.4 18,186 - GFF6832 0.17 -0.9 18,186 - GFF6832 0.17 -0.9 18,186 - GFF6832 0.17 -1.1 18,186 - GFF6832 0.17 -1.8 18,186 - GFF6832 0.17 -1.7 18,186 - GFF6832 0.17 -0.7 18,214 + GFF6832 0.20 +0.1 18,215 - GFF6832 0.20 +1.1 18,215 - GFF6832 0.20 +0.6 18,406 + GFF6832 0.40 +0.8 18,406 + GFF6832 0.40 -2.0 18,406 + GFF6832 0.40 +3.1 18,406 + GFF6832 0.40 +1.5 18,406 + GFF6832 0.40 -2.4 18,406 + GFF6832 0.40 +1.2 18,406 + GFF6832 0.40 -0.5 18,407 - GFF6832 0.40 -0.9 18,407 - GFF6832 0.40 -1.1 18,407 - GFF6832 0.40 -1.8 18,407 - GFF6832 0.40 -0.2 18,407 - GFF6832 0.40 -0.4 18,407 - GFF6832 0.40 -0.6 18,643 + GFF6832 0.64 -0.5 18,643 + GFF6832 0.64 -0.9 18,643 + GFF6832 0.64 -0.3 18,644 - GFF6832 0.65 -0.3 18,644 - GFF6832 0.65 -1.7 18,676 + GFF6832 0.68 -0.9 18,676 + GFF6832 0.68 +0.8 18,676 + GFF6832 0.68 +1.9 18,700 + GFF6832 0.70 -0.9 18,700 + GFF6832 0.70 -3.3 18,700 + GFF6832 0.70 -2.3 18,701 - GFF6832 0.71 -0.1 18,701 - GFF6832 0.71 -0.6 18,701 - GFF6832 0.71 +0.1 18,701 - GFF6832 0.71 -1.4 18,701 - GFF6832 0.71 -1.3 18,701 - GFF6832 0.71 -2.4 18,701 - GFF6832 0.71 -3.7 18,868 + GFF6832 0.88 +0.6 18,868 + GFF6832 0.88 -0.6 18,868 + GFF6832 0.88 -1.0 18,868 + GFF6832 0.88 +1.9 18,869 - GFF6832 0.88 +0.1 18,881 - GFF6832 0.89 +0.5 18,925 + -1.4 18,926 - -0.2 19,176 + GFF6833 0.59 -0.4 19,176 + GFF6833 0.59 -1.4 19,176 + GFF6833 0.59 -2.9 19,176 + GFF6833 0.59 -1.5 19,177 - GFF6833 0.60 -0.3 19,177 - GFF6833 0.60 +1.1 19,177 - GFF6833 0.60 +1.1 19,558 + GFF6834 0.36 -2.0 19,558 + GFF6834 0.36 +1.6 19,558 + GFF6834 0.36 -2.9 19,559 - GFF6834 0.36 -0.9 19,603 + GFF6834 0.45 -1.3 19,603 + GFF6834 0.45 -1.7 19,604 - GFF6834 0.46 +1.5 19,604 - GFF6834 0.46 -0.3 19,604 - GFF6834 0.46 +1.6 19,888 + -0.6 19,889 - -1.4 19,898 + -2.4 19,898 + -0.9 19,899 - -2.6 19,899 - -0.6 19,899 - -0.2 19,899 - -2.6 19,899 - -1.0 19,899 - -1.4 19,899 - +0.4 19,899 - +1.3 19,982 + GFF6835 0.11 +0.1 19,982 + GFF6835 0.11 -1.3 19,983 - GFF6835 0.11 -0.3 19,983 - GFF6835 0.11 -0.3 20,012 + GFF6835 0.16 +0.1 20,013 - GFF6835 0.16 -1.6 20,013 - GFF6835 0.16 -0.7 20,240 + GFF6835 0.55 +0.4 20,240 + GFF6835 0.55 +1.2 20,240 + GFF6835 0.55 -1.6 20,240 + GFF6835 0.55 -1.0 20,240 + GFF6835 0.55 -0.6 20,241 - GFF6835 0.55 -0.5 20,241 - GFF6835 0.55 +0.7
Or see this region's nucleotide sequence