Strain Fitness in Variovorax sp. SCN45 around GFF6803

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
49,210	+		GFF6802	0.33	-0.7
49,210	+		GFF6802	0.33	+3.9
49,280	-		GFF6802	0.39	-2.9
49,280	-		GFF6802	0.39	-1.4
49,280	-		GFF6802	0.39	+0.9
49,672	+		GFF6802	0.68	+0.9
49,672	+		GFF6802	0.68	+1.1
49,673	-		GFF6802	0.68	-1.6
49,673	-		GFF6802	0.68	+1.2
49,673	-		GFF6802	0.68	-1.4
49,732	+		GFF6802	0.72	+0.4
49,732	+		GFF6802	0.72	+0.4
49,732	+		GFF6802	0.72	-0.7
49,733	-		GFF6802	0.72	-1.8
49,733	-		GFF6802	0.72	-0.9
49,733	-		GFF6802	0.72	+0.6
49,733	-		GFF6802	0.72	-3.2
49,945	+		GFF6802	0.88	+2.7
49,945	+		GFF6802	0.88	-1.1
49,946	-		GFF6802	0.88	-2.0
49,970	-				+0.9
49,981	+				+2.2
49,981	+				+0.1
49,981	+				-1.4
49,981	+				+0.0
49,981	+				-1.6
49,981	+				-0.8
49,982	-				+0.1
49,982	-				-0.7
49,982	-				-0.1
49,982	-				-1.0
49,982	-				-0.1
49,982	-				-1.1
49,982	-				-1.1
50,307	+		GFF6803	0.15	-0.1
50,307	+		GFF6803	0.15	-2.4
50,307	+		GFF6803	0.15	-2.1
50,307	+		GFF6803	0.15	-0.7
50,307	+		GFF6803	0.15	+0.9
50,307	+		GFF6803	0.15	+0.4
50,307	+		GFF6803	0.15	+0.4
50,308	-		GFF6803	0.15	-2.1
50,308	-		GFF6803	0.15	-0.8
50,308	-		GFF6803	0.15	+1.1
50,308	-		GFF6803	0.15	+1.6
50,510	+		GFF6803	0.34	-1.3
50,510	+		GFF6803	0.34	-0.4
50,510	+		GFF6803	0.34	-1.1
50,511	-		GFF6803	0.34	-0.7
50,598	+		GFF6803	0.42	-1.7
50,598	+		GFF6803	0.42	-0.7
50,599	-		GFF6803	0.42	+1.2
50,599	-		GFF6803	0.42	+0.3
50,739	+		GFF6803	0.55	-0.1
50,739	+		GFF6803	0.55	+0.2
50,739	+		GFF6803	0.55	-1.4
50,739	+		GFF6803	0.55	+2.2
50,739	+		GFF6803	0.55	+2.0
50,739	+		GFF6803	0.55	+0.9
50,739	+		GFF6803	0.55	-2.7
50,740	-		GFF6803	0.55	-2.7
50,740	-		GFF6803	0.55	+0.9
50,740	-		GFF6803	0.55	-0.3
50,866	-		GFF6803	0.67	-0.5
50,866	-		GFF6803	0.67	-1.9
50,866	-		GFF6803	0.67	-3.7
50,940	+		GFF6803	0.74	-3.1
50,941	-		GFF6803	0.74	-0.1
51,252	+				+0.3
51,543	+		GFF6804	0.38	-0.2
51,700	+		GFF6804	0.58	-0.5
51,700	+		GFF6804	0.58	+1.0
51,700	+		GFF6804	0.58	-2.4
51,701	-		GFF6804	0.59	+1.0
51,701	-		GFF6804	0.59	-1.7
52,145	+		GFF6805	0.25	+1.6