Strain Fitness in Variovorax sp. SCN45 around GFF6775

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
20,909	+		GFF6774	0.30	-1.5
20,910	-		GFF6774	0.30	-2.4
20,910	-		GFF6774	0.30	+1.7
20,913	-		GFF6774	0.31	+0.3
20,913	-		GFF6774	0.31	-2.9
20,952	-		GFF6774	0.33	-0.9
21,017	+		GFF6774	0.38	-1.7
21,018	-		GFF6774	0.38	-1.1
21,018	-		GFF6774	0.38	-1.7
21,152	+		GFF6774	0.48	-2.6
21,152	+		GFF6774	0.48	+1.3
21,152	+		GFF6774	0.48	-1.1
21,153	-		GFF6774	0.48	+0.9
21,153	-		GFF6774	0.48	-1.0
21,153	-		GFF6774	0.48	-1.1
21,239	+		GFF6774	0.54	-0.4
21,251	+		GFF6774	0.55	-0.8
21,252	-		GFF6774	0.55	-0.1
21,435	-		GFF6774	0.68	-0.4
21,435	-		GFF6774	0.68	-3.2
21,495	-		GFF6774	0.73	-2.4
21,495	-		GFF6774	0.73	-0.4
21,600	-		GFF6774	0.80	+0.7
21,600	-		GFF6774	0.80	+0.2
21,692	+		GFF6774	0.87	-1.1
21,693	-		GFF6774	0.87	-0.4
21,740	+				-1.7
21,741	-				-1.4
22,056	+		GFF6775	0.16	-0.8
22,102	-		GFF6775	0.22	+0.0
22,102	-		GFF6775	0.22	-0.4
22,427	+		GFF6775	0.58	-0.3
22,427	+		GFF6775	0.58	-2.2
22,428	-		GFF6775	0.58	-2.6
22,428	-		GFF6775	0.58	+1.1
22,497	+		GFF6775	0.66	-3.2
22,497	+		GFF6775	0.66	-0.1
22,497	+		GFF6775	0.66	-1.0
22,575	+		GFF6775	0.75	+1.5
22,575	+		GFF6775	0.75	+0.2
22,575	+		GFF6775	0.75	+0.9
22,575	+		GFF6775	0.75	+1.9
22,576	-		GFF6775	0.75	-0.2
22,632	+		GFF6775	0.81	-1.2
22,632	+		GFF6775	0.81	+0.0
22,632	+		GFF6775	0.81	-1.0
22,696	-		GFF6775	0.88	-2.3
22,756	+				+0.6
22,757	-				-2.6
22,771	-				+0.7
22,771	-				-0.4
22,771	-				-0.7
22,771	-				-1.5
22,822	-				-1.5
22,886	+		GFF6776	0.11	-0.7
22,886	+		GFF6776	0.11	-0.4
22,887	-		GFF6776	0.11	-0.4
22,887	-		GFF6776	0.11	-2.3
23,000	+		GFF6776	0.24	-2.5
23,000	+		GFF6776	0.24	+2.7
23,001	-		GFF6776	0.24	-1.1
23,001	-		GFF6776	0.24	-0.7
23,157	-		GFF6776	0.42	-1.4
23,192	+		GFF6776	0.46	-0.2
23,192	+		GFF6776	0.46	-0.4
23,192	+		GFF6776	0.46	-3.0
23,193	-		GFF6776	0.47	+2.2
23,193	-		GFF6776	0.47	-0.7
23,193	-		GFF6776	0.47	-0.6
23,210	+		GFF6776	0.49	-2.5
23,210	+		GFF6776	0.49	-0.2
23,211	-		GFF6776	0.49	+0.9
23,375	+		GFF6776	0.68	-2.1
23,376	-		GFF6776	0.68	-1.3
23,417	+		GFF6776	0.73	+0.2
23,418	-		GFF6776	0.73	-3.0
23,444	+		GFF6776	0.76	+1.7
23,444	+		GFF6776	0.76	-0.8
23,444	+		GFF6776	0.76	-1.7
23,444	+		GFF6776	0.76	+0.3
23,444	+		GFF6776	0.76	+0.5
23,444	+		GFF6776	0.76	-1.0
23,445	-		GFF6776	0.76	-0.5
23,450	+		GFF6776	0.77	-3.4
23,450	+		GFF6776	0.77	-0.6
23,450	+		GFF6776	0.77	-0.2
23,450	+		GFF6776	0.77	-1.1
23,451	-		GFF6776	0.77	-1.1
23,451	-		GFF6776	0.77	-0.6
23,564	+				-1.4
23,564	+				+0.7
23,565	-				-1.7
23,588	+				-0.4
23,588	+				-0.4
23,588	+				-2.1
23,588	+				-3.0
23,589	-				-0.9
23,589	-				-3.2
23,589	-				-0.0
23,589	-				-2.2
23,591	+				-0.9
23,591	+				-0.0
23,591	+				-0.3
23,592	-				-3.6
23,592	-				-0.7
23,592	-				-0.8
23,592	-				+1.5
23,592	-				-2.3
23,606	+				-1.9
23,607	-				-0.7
23,607	-				-1.6