Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6706 and GFF6707 are separated by 0 nucleotides GFF6707 and GFF6708 are separated by 195 nucleotides GFF6708 and GFF6709 are separated by 19 nucleotides
GFF6706 - ATP-dependent Clp protease proteolytic subunit ClpP (EC 3.4.21.92), at 14,350 to 14,976
GFF6706
GFF6707 - RidA/YER057c/UK114 superfamily protein, at 14,977 to 15,366
GFF6707
GFF6708 - ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines), at 15,562 to 17,142
GFF6708
GFF6709 - Putative hemagglutinin-related protein, at 17,162 to 18,418
GFF6709
Position (kb) 15
16
17
18 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 14.859 kb on + strand, within GFF6706 at 14.860 kb on - strand, within GFF6706 at 14.993 kb on + strand at 14.993 kb on + strand at 14.993 kb on + strand at 14.993 kb on + strand at 14.994 kb on - strand at 14.994 kb on - strand at 14.994 kb on - strand at 15.077 kb on + strand, within GFF6707 at 15.077 kb on + strand, within GFF6707 at 15.077 kb on + strand, within GFF6707 at 15.078 kb on - strand, within GFF6707 at 15.078 kb on - strand, within GFF6707 at 15.078 kb on - strand, within GFF6707 at 15.078 kb on - strand, within GFF6707 at 15.086 kb on + strand, within GFF6707 at 15.086 kb on + strand, within GFF6707 at 15.086 kb on + strand, within GFF6707 at 15.086 kb on + strand, within GFF6707 at 15.086 kb on + strand, within GFF6707 at 15.086 kb on + strand, within GFF6707 at 15.086 kb on + strand, within GFF6707 at 15.086 kb on + strand, within GFF6707 at 15.086 kb on + strand, within GFF6707 at 15.087 kb on - strand, within GFF6707 at 15.087 kb on - strand, within GFF6707 at 15.087 kb on - strand, within GFF6707 at 15.087 kb on - strand, within GFF6707 at 15.087 kb on - strand, within GFF6707 at 15.087 kb on - strand, within GFF6707 at 15.087 kb on - strand, within GFF6707 at 15.087 kb on - strand, within GFF6707 at 15.087 kb on - strand, within GFF6707 at 15.087 kb on - strand, within GFF6707 at 15.087 kb on - strand, within GFF6707 at 15.087 kb on - strand, within GFF6707 at 15.087 kb on - strand, within GFF6707 at 15.087 kb on - strand, within GFF6707 at 15.087 kb on - strand, within GFF6707 at 15.275 kb on + strand, within GFF6707 at 15.275 kb on + strand, within GFF6707 at 15.275 kb on + strand, within GFF6707 at 15.275 kb on + strand, within GFF6707 at 15.275 kb on + strand, within GFF6707 at 15.275 kb on + strand, within GFF6707 at 15.275 kb on + strand, within GFF6707 at 15.276 kb on - strand, within GFF6707 at 15.276 kb on - strand, within GFF6707 at 15.276 kb on - strand, within GFF6707 at 15.276 kb on - strand, within GFF6707 at 15.353 kb on + strand at 15.353 kb on + strand at 15.354 kb on - strand at 15.491 kb on + strand at 15.491 kb on + strand at 15.491 kb on + strand at 15.491 kb on + strand at 15.491 kb on + strand at 15.491 kb on + strand at 15.491 kb on + strand at 15.491 kb on + strand at 15.491 kb on + strand at 15.491 kb on + strand at 15.491 kb on + strand at 15.491 kb on + strand at 15.491 kb on + strand at 15.491 kb on + strand at 15.491 kb on + strand at 15.492 kb on - strand at 15.492 kb on - strand at 15.492 kb on - strand at 15.492 kb on - strand at 15.492 kb on - strand at 15.492 kb on - strand at 15.492 kb on - strand at 15.492 kb on - strand at 15.492 kb on - strand at 15.492 kb on - strand at 15.492 kb on - strand at 15.492 kb on - strand at 15.492 kb on - strand at 15.492 kb on - strand at 15.492 kb on - strand at 15.492 kb on - strand at 15.492 kb on - strand at 15.492 kb on - strand at 15.492 kb on - strand at 15.787 kb on + strand, within GFF6708 at 15.788 kb on - strand, within GFF6708 at 15.788 kb on - strand, within GFF6708 at 15.799 kb on + strand, within GFF6708 at 15.799 kb on + strand, within GFF6708 at 15.799 kb on + strand, within GFF6708 at 15.799 kb on + strand, within GFF6708 at 15.800 kb on - strand, within GFF6708 at 15.800 kb on - strand, within GFF6708 at 15.800 kb on - strand, within GFF6708 at 15.800 kb on - strand, within GFF6708 at 15.800 kb on - strand, within GFF6708 at 15.800 kb on - strand, within GFF6708 at 15.800 kb on - strand, within GFF6708 at 15.877 kb on + strand, within GFF6708 at 15.877 kb on + strand, within GFF6708 at 15.877 kb on + strand, within GFF6708 at 15.878 kb on - strand, within GFF6708 at 15.878 kb on - strand, within GFF6708 at 15.878 kb on - strand, within GFF6708 at 16.060 kb on + strand, within GFF6708 at 16.061 kb on - strand, within GFF6708 at 16.165 kb on + strand, within GFF6708 at 16.166 kb on - strand, within GFF6708 at 16.166 kb on - strand, within GFF6708 at 16.222 kb on + strand, within GFF6708 at 16.222 kb on + strand, within GFF6708 at 16.223 kb on - strand, within GFF6708 at 16.223 kb on - strand, within GFF6708 at 16.223 kb on - strand, within GFF6708 at 16.223 kb on - strand, within GFF6708 at 16.223 kb on - strand, within GFF6708 at 16.627 kb on + strand, within GFF6708 at 16.628 kb on - strand, within GFF6708 at 16.628 kb on - strand, within GFF6708 at 16.628 kb on - strand, within GFF6708 at 16.628 kb on - strand, within GFF6708 at 16.678 kb on + strand, within GFF6708 at 16.718 kb on - strand, within GFF6708 at 16.729 kb on + strand, within GFF6708 at 16.729 kb on + strand, within GFF6708 at 16.729 kb on + strand, within GFF6708 at 16.730 kb on - strand, within GFF6708 at 16.730 kb on - strand, within GFF6708 at 16.730 kb on - strand, within GFF6708 at 16.849 kb on + strand, within GFF6708 at 16.849 kb on + strand, within GFF6708 at 16.849 kb on + strand, within GFF6708 at 17.024 kb on - strand at 17.024 kb on - strand at 17.038 kb on + strand at 17.038 kb on + strand at 17.039 kb on - strand at 17.039 kb on - strand at 17.039 kb on - strand at 17.039 kb on - strand at 17.039 kb on - strand at 17.039 kb on - strand at 17.039 kb on - strand at 17.039 kb on - strand at 17.039 kb on - strand at 17.039 kb on - strand at 17.039 kb on - strand at 17.095 kb on + strand at 17.095 kb on + strand at 17.095 kb on + strand at 17.095 kb on + strand at 17.095 kb on + strand at 17.095 kb on + strand at 17.095 kb on + strand at 17.095 kb on + strand at 17.096 kb on - strand at 17.096 kb on - strand at 17.096 kb on - strand at 17.096 kb on - strand at 17.096 kb on - strand at 17.140 kb on + strand at 17.140 kb on + strand at 17.141 kb on - strand at 17.141 kb on - strand at 17.141 kb on - strand at 17.237 kb on - strand at 17.268 kb on - strand at 17.273 kb on + strand at 17.273 kb on + strand at 17.273 kb on + strand at 17.274 kb on - strand at 17.285 kb on + strand at 17.286 kb on - strand at 17.471 kb on + strand, within GFF6709 at 17.472 kb on - strand, within GFF6709 at 17.579 kb on + strand, within GFF6709 at 17.580 kb on - strand, within GFF6709 at 17.580 kb on - strand, within GFF6709 at 17.580 kb on - strand, within GFF6709 at 17.580 kb on - strand, within GFF6709 at 17.624 kb on + strand, within GFF6709 at 17.624 kb on + strand, within GFF6709 at 17.624 kb on + strand, within GFF6709 at 17.624 kb on + strand, within GFF6709 at 17.625 kb on - strand, within GFF6709 at 17.625 kb on - strand, within GFF6709 at 17.699 kb on + strand, within GFF6709 at 17.996 kb on + strand, within GFF6709 at 17.996 kb on + strand, within GFF6709 at 17.996 kb on + strand, within GFF6709 at 17.997 kb on - strand, within GFF6709 at 18.038 kb on + strand, within GFF6709 at 18.113 kb on + strand, within GFF6709 at 18.114 kb on - strand, within GFF6709 at 18.114 kb on - strand, within GFF6709 at 18.114 kb on - strand, within GFF6709
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 14,859 + GFF6706 0.81 +0.1 14,860 - GFF6706 0.81 -0.5 14,993 + -1.7 14,993 + +0.5 14,993 + +0.6 14,993 + -3.7 14,994 - +1.2 14,994 - -3.1 14,994 - +0.8 15,077 + GFF6707 0.26 -1.7 15,077 + GFF6707 0.26 +0.4 15,077 + GFF6707 0.26 -0.1 15,078 - GFF6707 0.26 -1.9 15,078 - GFF6707 0.26 -0.0 15,078 - GFF6707 0.26 -0.9 15,078 - GFF6707 0.26 +2.5 15,086 + GFF6707 0.28 +0.1 15,086 + GFF6707 0.28 -1.8 15,086 + GFF6707 0.28 +0.3 15,086 + GFF6707 0.28 -0.3 15,086 + GFF6707 0.28 +0.1 15,086 + GFF6707 0.28 -0.8 15,086 + GFF6707 0.28 -0.5 15,086 + GFF6707 0.28 -2.2 15,086 + GFF6707 0.28 -1.8 15,087 - GFF6707 0.28 -1.1 15,087 - GFF6707 0.28 -1.9 15,087 - GFF6707 0.28 +0.4 15,087 - GFF6707 0.28 +0.1 15,087 - GFF6707 0.28 -3.0 15,087 - GFF6707 0.28 -0.5 15,087 - GFF6707 0.28 +0.2 15,087 - GFF6707 0.28 -0.6 15,087 - GFF6707 0.28 -2.5 15,087 - GFF6707 0.28 -0.4 15,087 - GFF6707 0.28 -0.1 15,087 - GFF6707 0.28 -3.6 15,087 - GFF6707 0.28 +0.7 15,087 - GFF6707 0.28 -1.8 15,087 - GFF6707 0.28 -1.9 15,275 + GFF6707 0.76 +2.1 15,275 + GFF6707 0.76 +1.1 15,275 + GFF6707 0.76 -3.2 15,275 + GFF6707 0.76 -0.7 15,275 + GFF6707 0.76 -3.0 15,275 + GFF6707 0.76 -0.7 15,275 + GFF6707 0.76 -2.8 15,276 - GFF6707 0.77 +0.1 15,276 - GFF6707 0.77 -2.1 15,276 - GFF6707 0.77 +0.1 15,276 - GFF6707 0.77 -0.5 15,353 + +2.2 15,353 + -0.9 15,354 - +0.3 15,491 + +1.1 15,491 + -1.0 15,491 + -2.5 15,491 + +0.2 15,491 + +0.1 15,491 + -1.3 15,491 + +1.6 15,491 + -0.5 15,491 + +0.2 15,491 + -0.9 15,491 + +2.1 15,491 + -1.4 15,491 + -1.5 15,491 + +2.7 15,491 + +0.7 15,492 - -0.4 15,492 - -3.2 15,492 - +1.1 15,492 - +1.3 15,492 - -0.5 15,492 - -2.6 15,492 - -4.1 15,492 - +2.1 15,492 - +0.2 15,492 - -0.8 15,492 - +0.1 15,492 - -0.4 15,492 - -0.5 15,492 - -0.3 15,492 - -0.4 15,492 - -1.0 15,492 - +0.6 15,492 - +2.0 15,492 - +0.3 15,787 + GFF6708 0.14 -0.7 15,788 - GFF6708 0.14 -3.3 15,788 - GFF6708 0.14 -1.1 15,799 + GFF6708 0.15 -2.8 15,799 + GFF6708 0.15 +0.1 15,799 + GFF6708 0.15 -2.2 15,799 + GFF6708 0.15 -1.4 15,800 - GFF6708 0.15 -0.4 15,800 - GFF6708 0.15 -1.9 15,800 - GFF6708 0.15 +0.6 15,800 - GFF6708 0.15 +0.3 15,800 - GFF6708 0.15 -0.8 15,800 - GFF6708 0.15 +2.7 15,800 - GFF6708 0.15 -0.5 15,877 + GFF6708 0.20 +0.9 15,877 + GFF6708 0.20 +0.5 15,877 + GFF6708 0.20 +0.1 15,878 - GFF6708 0.20 -4.8 15,878 - GFF6708 0.20 -0.7 15,878 - GFF6708 0.20 -1.1 16,060 + GFF6708 0.31 -0.9 16,061 - GFF6708 0.32 +0.7 16,165 + GFF6708 0.38 +0.5 16,166 - GFF6708 0.38 -1.8 16,166 - GFF6708 0.38 +0.5 16,222 + GFF6708 0.42 -1.2 16,222 + GFF6708 0.42 +0.4 16,223 - GFF6708 0.42 -1.4 16,223 - GFF6708 0.42 -0.8 16,223 - GFF6708 0.42 -0.5 16,223 - GFF6708 0.42 -1.9 16,223 - GFF6708 0.42 -2.6 16,627 + GFF6708 0.67 -1.9 16,628 - GFF6708 0.67 +0.5 16,628 - GFF6708 0.67 +0.1 16,628 - GFF6708 0.67 -1.7 16,628 - GFF6708 0.67 +0.1 16,678 + GFF6708 0.71 -1.6 16,718 - GFF6708 0.73 +2.2 16,729 + GFF6708 0.74 -1.1 16,729 + GFF6708 0.74 -0.6 16,729 + GFF6708 0.74 -0.9 16,730 - GFF6708 0.74 -1.1 16,730 - GFF6708 0.74 -2.1 16,730 - GFF6708 0.74 +0.8 16,849 + GFF6708 0.81 +0.8 16,849 + GFF6708 0.81 -1.7 16,849 + GFF6708 0.81 -1.9 17,024 - -0.1 17,024 - -1.9 17,038 + -0.3 17,038 + -0.9 17,039 - +0.2 17,039 - -1.8 17,039 - -1.9 17,039 - -1.7 17,039 - +0.1 17,039 - -0.6 17,039 - -0.5 17,039 - -2.3 17,039 - -0.5 17,039 - -2.5 17,039 - +0.1 17,095 + -3.2 17,095 + -0.6 17,095 + -2.7 17,095 + -0.9 17,095 + +4.3 17,095 + -0.7 17,095 + -1.0 17,095 + -0.8 17,096 - +2.4 17,096 - +1.3 17,096 - -0.1 17,096 - -1.7 17,096 - +0.2 17,140 + -3.7 17,140 + -2.0 17,141 - -3.3 17,141 - -2.8 17,141 - +1.3 17,237 - +0.0 17,268 - +0.6 17,273 + +2.1 17,273 + -3.5 17,273 + +1.6 17,274 - -2.1 17,285 + -1.2 17,286 - +0.1 17,471 + GFF6709 0.25 -1.1 17,472 - GFF6709 0.25 -1.9 17,579 + GFF6709 0.33 -0.3 17,580 - GFF6709 0.33 -1.4 17,580 - GFF6709 0.33 -0.3 17,580 - GFF6709 0.33 -0.9 17,580 - GFF6709 0.33 -1.9 17,624 + GFF6709 0.37 +0.7 17,624 + GFF6709 0.37 +2.1 17,624 + GFF6709 0.37 +0.8 17,624 + GFF6709 0.37 -0.7 17,625 - GFF6709 0.37 +0.1 17,625 - GFF6709 0.37 +0.0 17,699 + GFF6709 0.43 -3.2 17,996 + GFF6709 0.66 -2.6 17,996 + GFF6709 0.66 +1.1 17,996 + GFF6709 0.66 +1.6 17,997 - GFF6709 0.66 -1.0 18,038 + GFF6709 0.70 +0.4 18,113 + GFF6709 0.76 +1.3 18,114 - GFF6709 0.76 -0.3 18,114 - GFF6709 0.76 -1.3 18,114 - GFF6709 0.76 -1.8
Or see this region's nucleotide sequence