Strain Fitness in Variovorax sp. SCN45 around GFF6607

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6604 and GFF6605 overlap by 4 nucleotidesGFF6605 and GFF6606 overlap by 4 nucleotidesGFF6606 and GFF6607 are separated by 26 nucleotidesGFF6607 and GFF6608 are separated by 26 nucleotidesGFF6608 and GFF6609 are separated by 83 nucleotides GFF6604 - FIG00457034: hypothetical protein, at 50,266 to 50,538 GFF6604 GFF6605 - ParA-like protein, at 50,535 to 51,173 GFF6605 GFF6606 - no description, at 51,170 to 51,397 GFF6606 GFF6607 - Plasmid replication initiator protein, at 51,424 to 52,290 GFF6607 GFF6608 - hypothetical protein, at 52,317 to 52,598 GFF6608 GFF6609 - FIG00957806: hypothetical protein, at 52,682 to 53,434 GFF6609 Position (kb) 51 52 53Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 51.259 kb on + strand, within GFF6606at 51.259 kb on + strand, within GFF6606at 51.262 kb on + strand, within GFF6606at 51.263 kb on - strand, within GFF6606at 51.263 kb on - strand, within GFF6606at 51.263 kb on - strand, within GFF6606at 51.263 kb on - strand, within GFF6606at 51.266 kb on + strand, within GFF6606at 51.266 kb on + strand, within GFF6606at 51.266 kb on + strand, within GFF6606at 51.267 kb on - strand, within GFF6606at 51.267 kb on - strand, within GFF6606at 51.267 kb on - strand, within GFF6606at 51.267 kb on - strand, within GFF6606at 51.267 kb on - strand, within GFF6606at 51.267 kb on - strand, within GFF6606at 51.271 kb on + strand, within GFF6606at 51.271 kb on + strand, within GFF6606at 51.271 kb on + strand, within GFF6606at 51.271 kb on + strand, within GFF6606at 51.272 kb on - strand, within GFF6606at 51.275 kb on + strand, within GFF6606at 51.275 kb on + strand, within GFF6606at 51.276 kb on - strand, within GFF6606at 51.276 kb on - strand, within GFF6606at 51.281 kb on + strand, within GFF6606at 51.281 kb on + strand, within GFF6606at 51.282 kb on - strand, within GFF6606at 51.282 kb on - strand, within GFF6606at 51.284 kb on + strand, within GFF6606at 51.284 kb on + strand, within GFF6606at 51.284 kb on + strand, within GFF6606at 51.284 kb on + strand, within GFF6606at 51.284 kb on + strand, within GFF6606at 51.285 kb on - strand, within GFF6606at 51.285 kb on - strand, within GFF6606at 51.285 kb on - strand, within GFF6606at 51.285 kb on - strand, within GFF6606at 51.285 kb on - strand, within GFF6606at 51.285 kb on - strand, within GFF6606at 51.289 kb on + strand, within GFF6606at 51.290 kb on - strand, within GFF6606at 51.292 kb on - strand, within GFF6606at 51.315 kb on - strand, within GFF6606at 51.345 kb on + strand, within GFF6606at 51.393 kb on - strandat 51.454 kb on + strandat 51.454 kb on + strandat 51.454 kb on + strandat 51.454 kb on + strandat 51.454 kb on + strandat 51.454 kb on + strandat 51.454 kb on + strandat 51.455 kb on - strandat 51.455 kb on - strandat 51.455 kb on - strandat 51.455 kb on - strandat 51.665 kb on + strand, within GFF6607at 51.666 kb on - strand, within GFF6607at 51.702 kb on - strand, within GFF6607at 51.749 kb on + strand, within GFF6607at 51.749 kb on + strand, within GFF6607at 51.749 kb on + strand, within GFF6607at 51.749 kb on + strand, within GFF6607at 51.750 kb on - strand, within GFF6607at 51.750 kb on - strand, within GFF6607at 51.750 kb on - strand, within GFF6607at 51.750 kb on - strand, within GFF6607at 51.924 kb on - strand, within GFF6607at 51.939 kb on + strand, within GFF6607at 51.940 kb on - strand, within GFF6607at 52.354 kb on + strand, within GFF6608at 52.420 kb on + strand, within GFF6608at 52.420 kb on + strand, within GFF6608at 52.420 kb on + strand, within GFF6608at 52.420 kb on + strand, within GFF6608at 52.420 kb on + strand, within GFF6608at 52.421 kb on - strand, within GFF6608at 52.421 kb on - strand, within GFF6608at 52.421 kb on - strand, within GFF6608at 52.421 kb on - strand, within GFF6608at 52.507 kb on + strand, within GFF6608at 52.507 kb on + strand, within GFF6608at 52.507 kb on + strand, within GFF6608at 52.534 kb on + strand, within GFF6608at 52.535 kb on - strand, within GFF6608at 52.535 kb on - strand, within GFF6608at 52.535 kb on - strand, within GFF6608at 52.535 kb on - strand, within GFF6608at 52.613 kb on + strandat 52.613 kb on + strandat 53.010 kb on + strand, within GFF6609at 53.010 kb on + strand, within GFF6609at 53.010 kb on + strand, within GFF6609at 53.011 kb on - strand, within GFF6609at 53.011 kb on - strand, within GFF6609at 53.011 kb on - strand, within GFF6609at 53.182 kb on - strand, within GFF6609

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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51,259 + GFF6606 0.39 +1.1
51,259 + GFF6606 0.39 +0.0
51,262 + GFF6606 0.40 -1.0
51,263 - GFF6606 0.41 -1.2
51,263 - GFF6606 0.41 -1.9
51,263 - GFF6606 0.41 -3.1
51,263 - GFF6606 0.41 -2.3
51,266 + GFF6606 0.42 -0.7
51,266 + GFF6606 0.42 +0.7
51,266 + GFF6606 0.42 -2.9
51,267 - GFF6606 0.43 -1.0
51,267 - GFF6606 0.43 +1.8
51,267 - GFF6606 0.43 -1.8
51,267 - GFF6606 0.43 -4.1
51,267 - GFF6606 0.43 +0.4
51,267 - GFF6606 0.43 +0.3
51,271 + GFF6606 0.44 -2.1
51,271 + GFF6606 0.44 -1.7
51,271 + GFF6606 0.44 -0.1
51,271 + GFF6606 0.44 -1.7
51,272 - GFF6606 0.45 -2.4
51,275 + GFF6606 0.46 +0.8
51,275 + GFF6606 0.46 -3.1
51,276 - GFF6606 0.46 +0.2
51,276 - GFF6606 0.46 -1.1
51,281 + GFF6606 0.49 -0.2
51,281 + GFF6606 0.49 -0.2
51,282 - GFF6606 0.49 -0.2
51,282 - GFF6606 0.49 -0.4
51,284 + GFF6606 0.50 -2.2
51,284 + GFF6606 0.50 +0.0
51,284 + GFF6606 0.50 -2.5
51,284 + GFF6606 0.50 -0.0
51,284 + GFF6606 0.50 -2.0
51,285 - GFF6606 0.50 -1.0
51,285 - GFF6606 0.50 +1.3
51,285 - GFF6606 0.50 +1.2
51,285 - GFF6606 0.50 +1.1
51,285 - GFF6606 0.50 +0.4
51,285 - GFF6606 0.50 +0.5
51,289 + GFF6606 0.52 +1.1
51,290 - GFF6606 0.53 +1.1
51,292 - GFF6606 0.54 -0.4
51,315 - GFF6606 0.64 -0.8
51,345 + GFF6606 0.77 -1.0
51,393 - -4.2
51,454 + +0.8
51,454 + -1.7
51,454 + -0.5
51,454 + -1.4
51,454 + -1.0
51,454 + -0.1
51,454 + +0.8
51,455 - -0.1
51,455 - +0.2
51,455 - -1.9
51,455 - -0.9
51,665 + GFF6607 0.28 +0.1
51,666 - GFF6607 0.28 -1.9
51,702 - GFF6607 0.32 -3.4
51,749 + GFF6607 0.37 -0.6
51,749 + GFF6607 0.37 -0.2
51,749 + GFF6607 0.37 +1.1
51,749 + GFF6607 0.37 -0.1
51,750 - GFF6607 0.38 -2.8
51,750 - GFF6607 0.38 +1.3
51,750 - GFF6607 0.38 -2.8
51,750 - GFF6607 0.38 -2.1
51,924 - GFF6607 0.58 -0.5
51,939 + GFF6607 0.59 -1.2
51,940 - GFF6607 0.60 -0.8
52,354 + GFF6608 0.13 -5.1
52,420 + GFF6608 0.37 +0.9
52,420 + GFF6608 0.37 +1.0
52,420 + GFF6608 0.37 +0.2
52,420 + GFF6608 0.37 +0.8
52,420 + GFF6608 0.37 -1.4
52,421 - GFF6608 0.37 +0.2
52,421 - GFF6608 0.37 +0.7
52,421 - GFF6608 0.37 +1.8
52,421 - GFF6608 0.37 +0.5
52,507 + GFF6608 0.67 +1.6
52,507 + GFF6608 0.67 -1.9
52,507 + GFF6608 0.67 +0.7
52,534 + GFF6608 0.77 -1.4
52,535 - GFF6608 0.77 +0.7
52,535 - GFF6608 0.77 -1.0
52,535 - GFF6608 0.77 -0.5
52,535 - GFF6608 0.77 +1.5
52,613 + -2.5
52,613 + +0.3
53,010 + GFF6609 0.44 -3.9
53,010 + GFF6609 0.44 -1.5
53,010 + GFF6609 0.44 +0.6
53,011 - GFF6609 0.44 -1.1
53,011 - GFF6609 0.44 -1.2
53,011 - GFF6609 0.44 -2.0
53,182 - GFF6609 0.66 -2.4

Or see this region's nucleotide sequence