Strain Fitness in Variovorax sp. SCN45 around GFF66

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
81,477	+				+0.2
81,477	+				+0.6
81,477	+				+0.6
81,477	+				-1.6
81,477	+				+0.4
81,477	+				+0.8
81,477	+				-1.0
81,477	+				+1.1
81,478	-				-1.0
81,478	-				-1.9
81,478	-				-0.7
81,478	-				-0.9
81,478	-				+0.0
81,481	+				-0.0
81,482	-				-0.7
81,482	-				-0.2
81,506	+				+0.1
81,630	+		GFF65	0.14	-1.4
81,652	-		GFF65	0.16	+1.3
81,652	-		GFF65	0.16	+1.8
81,652	-		GFF65	0.16	+0.2
81,706	-		GFF65	0.22	+0.9
81,706	-		GFF65	0.22	-2.1
81,723	+		GFF65	0.24	-1.0
81,723	+		GFF65	0.24	-0.7
81,724	-		GFF65	0.24	+0.9
81,724	-		GFF65	0.24	+0.0
81,724	-		GFF65	0.24	-1.2
81,724	-		GFF65	0.24	+0.1
81,843	+		GFF65	0.37	+0.1
81,843	+		GFF65	0.37	-1.4
81,844	-		GFF65	0.37	+3.1
81,844	-		GFF65	0.37	-1.0
81,844	-		GFF65	0.37	+1.8
81,844	-		GFF65	0.37	-3.1
81,844	-		GFF65	0.37	-3.3
81,948	+		GFF65	0.48	-1.9
81,948	+		GFF65	0.48	+0.6
81,948	+		GFF65	0.48	-1.5
81,948	+		GFF65	0.48	+0.5
81,948	+		GFF65	0.48	+0.4
81,949	-		GFF65	0.48	+0.0
81,949	-		GFF65	0.48	-1.1
81,949	-		GFF65	0.48	-2.1
82,044	+		GFF65	0.58	-2.7
82,045	-		GFF65	0.58	-1.4
82,323	+		GFF65	0.88	-2.1
82,323	+		GFF65	0.88	+0.0
82,324	-		GFF65	0.88	+1.0
82,431	+				+0.4
82,540	+				+2.4
82,541	-				-0.7
82,541	-				+2.1
82,544	+				+1.7
82,544	+				+1.7
82,544	+				+2.0
82,544	+				+2.0
82,544	+				+2.2
82,544	+				+0.4
82,544	+				-4.1
82,544	+				-0.6
82,545	-				+0.6
82,545	-				+0.8
82,545	-				-0.7
82,545	-				-4.1
82,545	-				-2.7
82,545	-				-1.4
82,545	-				-2.2
82,545	-				+0.0
82,545	-				+0.5
82,546	+				-0.4
82,876	+		GFF66	0.33	+0.2
83,122	+		GFF66	0.53	-1.6
83,122	+		GFF66	0.53	+0.3
83,191	+		GFF66	0.59	-0.8
83,467	+		GFF66	0.81	-0.7
83,467	+		GFF66	0.81	-2.0
83,467	+		GFF66	0.81	+2.2
83,467	+		GFF66	0.81	-1.3
83,468	-		GFF66	0.81	-0.4
83,468	-		GFF66	0.81	-2.3
83,468	-		GFF66	0.81	-1.7
83,468	-		GFF66	0.81	-0.9
83,564	-		GFF66	0.88	-3.1
83,602	+				+0.3
83,602	+				+0.0
83,602	+				+0.1
83,603	-				-2.4
83,721	+				+1.0
83,721	+				-0.8
83,721	+				-0.6
83,722	-				+0.6
83,763	+				-2.4
83,764	-				+0.4
83,854	-		GFF67	0.12	-2.2
83,877	+		GFF67	0.14	-0.7
83,878	-		GFF67	0.14	-0.3
84,126	+		GFF67	0.34	-1.7
84,126	+		GFF67	0.34	-0.3
84,127	-		GFF67	0.34	+1.0
84,408	+		GFF67	0.57	-2.3
84,408	+		GFF67	0.57	-0.5
84,409	-		GFF67	0.57	-2.1
84,409	-		GFF67	0.57	-0.1