Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6596 and GFF6597 are separated by 1 nucleotides GFF6597 and GFF6598 are separated by 717 nucleotides
GFF6596 - Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE, at 40,060 to 41,175
GFF6596
GFF6597 - Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF, at 41,177 to 42,478
GFF6597
GFF6598 - Putative formate dehydrogenase oxidoreductase protein, at 43,196 to 45,472
GFF6598
Position (kb) 41
42
43 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 40.371 kb on + strand, within GFF6596 at 40.469 kb on + strand, within GFF6596 at 40.510 kb on + strand, within GFF6596 at 40.581 kb on - strand, within GFF6596 at 40.641 kb on - strand, within GFF6596 at 40.646 kb on + strand, within GFF6596 at 40.932 kb on - strand, within GFF6596 at 40.960 kb on + strand, within GFF6596 at 41.333 kb on + strand, within GFF6597 at 41.333 kb on + strand, within GFF6597 at 41.903 kb on - strand, within GFF6597 at 41.903 kb on - strand, within GFF6597 at 42.007 kb on - strand, within GFF6597 at 42.222 kb on - strand, within GFF6597 at 42.248 kb on + strand, within GFF6597 at 42.468 kb on + strand at 42.468 kb on + strand at 42.555 kb on + strand at 42.555 kb on + strand at 42.606 kb on + strand at 42.723 kb on - strand at 42.743 kb on + strand at 42.743 kb on + strand at 42.744 kb on - strand at 42.755 kb on + strand at 42.755 kb on + strand at 42.836 kb on - strand at 42.856 kb on + strand at 43.027 kb on + strand at 43.027 kb on + strand at 43.044 kb on - strand at 43.097 kb on - strand at 43.122 kb on - strand at 43.233 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 40,371 + GFF6596 0.28 -2.3 40,469 + GFF6596 0.37 -0.6 40,510 + GFF6596 0.40 -2.8 40,581 - GFF6596 0.47 +2.4 40,641 - GFF6596 0.52 -1.2 40,646 + GFF6596 0.53 +0.5 40,932 - GFF6596 0.78 -0.1 40,960 + GFF6596 0.81 +0.2 41,333 + GFF6597 0.12 -0.8 41,333 + GFF6597 0.12 -0.7 41,903 - GFF6597 0.56 -0.1 41,903 - GFF6597 0.56 -1.8 42,007 - GFF6597 0.64 -0.8 42,222 - GFF6597 0.80 -1.3 42,248 + GFF6597 0.82 -0.7 42,468 + -1.2 42,468 + +2.1 42,555 + +0.6 42,555 + +0.6 42,606 + -0.8 42,723 - +0.1 42,743 + -1.7 42,743 + -1.9 42,744 - +0.2 42,755 + -2.1 42,755 + -2.1 42,836 - -0.8 42,856 + -2.7 43,027 + -0.5 43,027 + -2.1 43,044 - -0.1 43,097 - -1.0 43,122 - -0.8 43,233 - -0.3
Or see this region's nucleotide sequence