Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6539 and GFF6540 are separated by 4 nucleotides GFF6540 and GFF6541 are separated by 26 nucleotides
GFF6539 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 35,741 to 37,291
GFF6539
GFF6540 - FIG00994002: hypothetical protein, at 37,296 to 38,432
GFF6540
GFF6541 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 38,459 to 39,262
GFF6541
Position (kb) 37
38
39 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 36.465 kb on + strand, within GFF6539 at 36.466 kb on - strand, within GFF6539 at 36.528 kb on + strand, within GFF6539 at 36.528 kb on + strand, within GFF6539 at 36.528 kb on + strand, within GFF6539 at 36.528 kb on + strand, within GFF6539 at 36.528 kb on + strand, within GFF6539 at 36.528 kb on + strand, within GFF6539 at 36.528 kb on + strand, within GFF6539 at 36.528 kb on + strand, within GFF6539 at 36.528 kb on + strand, within GFF6539 at 36.528 kb on + strand, within GFF6539 at 36.528 kb on + strand, within GFF6539 at 36.528 kb on + strand, within GFF6539 at 36.529 kb on - strand, within GFF6539 at 36.529 kb on - strand, within GFF6539 at 36.529 kb on - strand, within GFF6539 at 36.529 kb on - strand, within GFF6539 at 36.693 kb on + strand, within GFF6539 at 36.694 kb on - strand, within GFF6539 at 36.717 kb on + strand, within GFF6539 at 36.969 kb on + strand, within GFF6539 at 37.061 kb on + strand, within GFF6539 at 37.061 kb on + strand, within GFF6539 at 37.062 kb on - strand, within GFF6539 at 37.062 kb on - strand, within GFF6539 at 37.062 kb on - strand, within GFF6539 at 37.438 kb on + strand, within GFF6540 at 37.439 kb on - strand, within GFF6540 at 37.439 kb on - strand, within GFF6540 at 37.465 kb on + strand, within GFF6540 at 37.465 kb on + strand, within GFF6540 at 37.465 kb on + strand, within GFF6540 at 37.465 kb on + strand, within GFF6540 at 37.465 kb on + strand, within GFF6540 at 37.609 kb on + strand, within GFF6540 at 37.817 kb on - strand, within GFF6540 at 37.846 kb on + strand, within GFF6540 at 37.867 kb on + strand, within GFF6540 at 37.867 kb on + strand, within GFF6540 at 37.867 kb on + strand, within GFF6540 at 37.868 kb on - strand, within GFF6540 at 38.008 kb on + strand, within GFF6540 at 38.008 kb on + strand, within GFF6540 at 38.008 kb on + strand, within GFF6540 at 38.008 kb on + strand, within GFF6540 at 38.008 kb on + strand, within GFF6540 at 38.009 kb on - strand, within GFF6540 at 38.009 kb on - strand, within GFF6540 at 38.009 kb on - strand, within GFF6540 at 38.009 kb on - strand, within GFF6540 at 38.009 kb on - strand, within GFF6540 at 38.009 kb on - strand, within GFF6540 at 38.116 kb on + strand, within GFF6540 at 38.116 kb on + strand, within GFF6540 at 38.117 kb on - strand, within GFF6540 at 38.117 kb on - strand, within GFF6540 at 38.257 kb on + strand, within GFF6540 at 38.258 kb on - strand, within GFF6540 at 38.347 kb on + strand at 38.688 kb on + strand, within GFF6541 at 39.280 kb on + strand at 39.281 kb on - strand at 39.307 kb on + strand at 39.410 kb on + strand at 39.411 kb on - strand at 39.411 kb on - strand at 39.411 kb on - strand at 39.432 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 36,465 + GFF6539 0.47 -0.4 36,466 - GFF6539 0.47 -0.1 36,528 + GFF6539 0.51 +0.5 36,528 + GFF6539 0.51 +1.7 36,528 + GFF6539 0.51 -1.5 36,528 + GFF6539 0.51 -1.6 36,528 + GFF6539 0.51 -2.7 36,528 + GFF6539 0.51 -1.1 36,528 + GFF6539 0.51 +0.6 36,528 + GFF6539 0.51 -0.9 36,528 + GFF6539 0.51 -1.8 36,528 + GFF6539 0.51 -2.7 36,528 + GFF6539 0.51 +1.0 36,528 + GFF6539 0.51 -0.9 36,529 - GFF6539 0.51 -2.5 36,529 - GFF6539 0.51 -0.8 36,529 - GFF6539 0.51 -3.4 36,529 - GFF6539 0.51 +0.3 36,693 + GFF6539 0.61 +0.6 36,694 - GFF6539 0.61 -3.6 36,717 + GFF6539 0.63 -0.2 36,969 + GFF6539 0.79 -2.0 37,061 + GFF6539 0.85 -0.5 37,061 + GFF6539 0.85 -2.1 37,062 - GFF6539 0.85 +0.9 37,062 - GFF6539 0.85 +0.7 37,062 - GFF6539 0.85 +1.6 37,438 + GFF6540 0.12 +0.9 37,439 - GFF6540 0.13 -3.0 37,439 - GFF6540 0.13 +0.3 37,465 + GFF6540 0.15 -1.5 37,465 + GFF6540 0.15 +0.8 37,465 + GFF6540 0.15 +1.6 37,465 + GFF6540 0.15 -2.7 37,465 + GFF6540 0.15 -3.9 37,609 + GFF6540 0.28 -1.3 37,817 - GFF6540 0.46 -1.8 37,846 + GFF6540 0.48 +0.2 37,867 + GFF6540 0.50 -0.1 37,867 + GFF6540 0.50 -1.1 37,867 + GFF6540 0.50 +1.9 37,868 - GFF6540 0.50 +2.7 38,008 + GFF6540 0.63 -0.5 38,008 + GFF6540 0.63 +0.3 38,008 + GFF6540 0.63 -1.3 38,008 + GFF6540 0.63 +2.2 38,008 + GFF6540 0.63 +0.5 38,009 - GFF6540 0.63 -1.6 38,009 - GFF6540 0.63 -1.0 38,009 - GFF6540 0.63 -0.5 38,009 - GFF6540 0.63 -2.2 38,009 - GFF6540 0.63 -1.7 38,009 - GFF6540 0.63 +0.2 38,116 + GFF6540 0.72 +3.4 38,116 + GFF6540 0.72 -0.7 38,117 - GFF6540 0.72 -3.0 38,117 - GFF6540 0.72 -1.3 38,257 + GFF6540 0.85 -3.0 38,258 - GFF6540 0.85 +0.7 38,347 + -1.1 38,688 + GFF6541 0.28 +1.3 39,280 + +1.5 39,281 - -0.9 39,307 + -0.7 39,410 + +0.9 39,411 - -0.9 39,411 - +2.9 39,411 - +2.4 39,432 + +0.2
Or see this region's nucleotide sequence