Strain Fitness in Variovorax sp. SCN45 around GFF6481

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
59,219	+		GFF6480	0.16	-1.8
59,219	+		GFF6480	0.16	+1.0
59,220	-		GFF6480	0.16	-2.1
59,220	-		GFF6480	0.16	-0.2
59,220	-		GFF6480	0.16	+0.3
59,220	-		GFF6480	0.16	+0.9
59,220	-		GFF6480	0.16	-2.1
59,220	-		GFF6480	0.16	-0.2
59,220	-		GFF6480	0.16	-0.5
59,220	-		GFF6480	0.16	-0.5
59,226	-		GFF6480	0.17	-0.9
59,351	+		GFF6480	0.31	-0.7
59,351	+		GFF6480	0.31	-1.8
59,351	+		GFF6480	0.31	-2.4
59,352	-		GFF6480	0.31	+1.7
59,378	+		GFF6480	0.34	+0.9
59,378	+		GFF6480	0.34	-0.7
59,379	-		GFF6480	0.34	+0.2
59,379	-		GFF6480	0.34	-0.9
59,379	-		GFF6480	0.34	-1.5
59,400	-		GFF6480	0.36	+0.3
59,400	-		GFF6480	0.36	-0.1
59,411	+		GFF6480	0.37	-1.5
59,412	-		GFF6480	0.37	+0.3
59,852	+		GFF6480	0.86	-0.0
59,853	-		GFF6480	0.86	-0.1
59,853	-		GFF6480	0.86	-0.5
59,853	-		GFF6480	0.86	+0.3
60,030	+				-2.0
60,030	+				-0.8
60,031	-				-3.1
60,031	-				-2.1
60,031	-				-3.5
60,031	-				-1.0
60,043	+				-2.4
60,043	+				+0.2
60,044	-				-0.6
60,350	+		GFF6481	0.21	-1.8
60,350	+		GFF6481	0.21	+0.3
60,351	-		GFF6481	0.21	-0.3
60,351	-		GFF6481	0.21	-1.1
60,422	+		GFF6481	0.27	+1.9
60,422	+		GFF6481	0.27	+0.1
60,422	+		GFF6481	0.27	+1.9
60,423	-		GFF6481	0.27	+1.9
60,423	-		GFF6481	0.27	-1.0
60,423	-		GFF6481	0.27	-2.2
60,423	-		GFF6481	0.27	-0.1
60,431	+		GFF6481	0.28	-0.7
60,432	-		GFF6481	0.28	-1.6
60,500	+		GFF6481	0.34	-1.4
60,500	+		GFF6481	0.34	+1.9
60,500	+		GFF6481	0.34	+0.9
60,500	+		GFF6481	0.34	+1.4
60,500	+		GFF6481	0.34	+0.1
60,500	+		GFF6481	0.34	-0.8
60,500	+		GFF6481	0.34	-0.6
60,501	-		GFF6481	0.34	-1.5
60,501	-		GFF6481	0.34	-3.9
60,501	-		GFF6481	0.34	+0.8
60,501	-		GFF6481	0.34	+1.3
60,539	+		GFF6481	0.38	-0.4
60,539	+		GFF6481	0.38	+0.4
60,540	-		GFF6481	0.38	+0.2
60,540	-		GFF6481	0.38	-0.1
60,557	+		GFF6481	0.39	+2.0
60,557	+		GFF6481	0.39	+1.2
60,557	+		GFF6481	0.39	-1.6
60,558	-		GFF6481	0.40	-0.8
60,558	-		GFF6481	0.40	-0.2
60,558	-		GFF6481	0.40	+0.9
60,773	+		GFF6481	0.59	-2.4
60,794	+		GFF6481	0.61	-1.8
60,794	+		GFF6481	0.61	-0.1
60,794	+		GFF6481	0.61	+0.6
60,821	+		GFF6481	0.63	+0.5
60,821	+		GFF6481	0.63	-2.5
60,821	+		GFF6481	0.63	+1.5
60,821	+		GFF6481	0.63	+0.6
60,821	+		GFF6481	0.63	-1.5
60,821	+		GFF6481	0.63	-0.7
60,822	-		GFF6481	0.63	+0.1
60,822	-		GFF6481	0.63	-1.1
60,822	-		GFF6481	0.63	+0.8
60,869	+		GFF6481	0.67	-1.8
60,869	+		GFF6481	0.67	-0.7
60,869	+		GFF6481	0.67	-2.2
60,870	-		GFF6481	0.68	+0.3
60,870	-		GFF6481	0.68	-1.0
60,870	-		GFF6481	0.68	-1.9
60,930	-		GFF6481	0.73	+2.3
60,936	-		GFF6481	0.73	-0.7
60,936	-		GFF6481	0.73	+1.6
60,936	-		GFF6481	0.73	+0.4
60,936	-		GFF6481	0.73	+2.6
61,046	+		GFF6481	0.83	-0.2
61,047	-		GFF6481	0.83	-1.7
61,047	-		GFF6481	0.83	-0.9
61,076	+		GFF6481	0.86	-2.3
61,076	+		GFF6481	0.86	-2.7
61,077	-		GFF6481	0.86	+0.3
61,077	-		GFF6481	0.86	+0.9
61,210	+				-2.7
61,211	-				-1.3
61,241	+				-2.4
61,241	+				-2.3
61,242	-				-1.3
61,242	-				+0.1
61,242	-				+1.1
61,242	-				+0.2
61,242	-				-0.4
61,242	-				+1.7
61,242	-				-1.2
61,355	+		GFF6482	0.12	+0.3
61,356	-		GFF6482	0.12	+0.3
61,356	-		GFF6482	0.12	-1.3
61,451	+		GFF6482	0.27	-0.5
61,451	+		GFF6482	0.27	+0.3
61,451	+		GFF6482	0.27	-0.8
61,451	+		GFF6482	0.27	+0.6
61,451	+		GFF6482	0.27	-1.6
61,452	-		GFF6482	0.28	-2.7
61,452	-		GFF6482	0.28	-1.9
61,457	+		GFF6482	0.28	+2.1
61,458	-		GFF6482	0.29	-1.6
61,458	-		GFF6482	0.29	-0.4
61,490	+		GFF6482	0.34	-2.5
61,692	-		GFF6482	0.66	-0.9