Strain Fitness in Variovorax sp. SCN45 around GFF6469

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6468 and GFF6469 overlap by 4 nucleotidesGFF6469 and GFF6470 overlap by 4 nucleotides GFF6468 - TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein, at 45,262 to 46,230 GFF6468 GFF6469 - TRAP-type transport system, large permease component, predicted N-acetylneuraminate transporter, at 46,227 to 46,721 GFF6469 GFF6470 - TRAP-type C4-dicarboxylate transport system, large permease component, at 46,718 to 47,995 GFF6470 Position (kb) 46 47Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 45.427 kb on + strand, within GFF6468at 45.428 kb on - strand, within GFF6468at 45.428 kb on - strand, within GFF6468at 45.428 kb on - strand, within GFF6468at 45.428 kb on - strand, within GFF6468at 45.445 kb on + strand, within GFF6468at 45.445 kb on + strand, within GFF6468at 45.445 kb on + strand, within GFF6468at 45.445 kb on + strand, within GFF6468at 45.445 kb on + strand, within GFF6468at 45.445 kb on + strand, within GFF6468at 45.790 kb on + strand, within GFF6468at 45.791 kb on - strand, within GFF6468at 45.791 kb on - strand, within GFF6468at 46.222 kb on + strandat 46.223 kb on - strandat 46.223 kb on - strandat 46.405 kb on + strand, within GFF6469at 46.405 kb on + strand, within GFF6469at 46.405 kb on + strand, within GFF6469at 46.405 kb on + strand, within GFF6469at 46.405 kb on + strand, within GFF6469at 46.405 kb on + strand, within GFF6469at 46.405 kb on + strand, within GFF6469at 46.405 kb on + strand, within GFF6469at 46.406 kb on - strand, within GFF6469at 46.406 kb on - strand, within GFF6469at 46.406 kb on - strand, within GFF6469at 46.406 kb on - strand, within GFF6469at 46.465 kb on - strand, within GFF6469at 46.563 kb on + strand, within GFF6469at 46.626 kb on + strand, within GFF6469at 46.626 kb on + strand, within GFF6469at 46.680 kb on + strandat 46.681 kb on - strandat 46.681 kb on - strandat 46.847 kb on + strand, within GFF6470at 46.899 kb on + strand, within GFF6470at 46.899 kb on + strand, within GFF6470at 46.899 kb on + strand, within GFF6470at 46.900 kb on - strand, within GFF6470at 46.900 kb on - strand, within GFF6470at 47.115 kb on - strand, within GFF6470at 47.134 kb on + strand, within GFF6470at 47.135 kb on - strand, within GFF6470at 47.135 kb on - strand, within GFF6470at 47.135 kb on - strand, within GFF6470at 47.183 kb on + strand, within GFF6470at 47.187 kb on - strand, within GFF6470at 47.285 kb on + strand, within GFF6470at 47.285 kb on + strand, within GFF6470at 47.285 kb on + strand, within GFF6470at 47.285 kb on + strand, within GFF6470at 47.286 kb on - strand, within GFF6470at 47.286 kb on - strand, within GFF6470at 47.402 kb on + strand, within GFF6470at 47.402 kb on + strand, within GFF6470at 47.403 kb on - strand, within GFF6470at 47.403 kb on - strand, within GFF6470at 47.403 kb on - strand, within GFF6470at 47.450 kb on + strand, within GFF6470at 47.450 kb on + strand, within GFF6470at 47.450 kb on + strand, within GFF6470at 47.451 kb on - strand, within GFF6470at 47.478 kb on - strand, within GFF6470at 47.478 kb on - strand, within GFF6470at 47.504 kb on + strand, within GFF6470at 47.504 kb on + strand, within GFF6470at 47.504 kb on + strand, within GFF6470at 47.504 kb on + strand, within GFF6470at 47.505 kb on - strand, within GFF6470at 47.505 kb on - strand, within GFF6470at 47.505 kb on - strand, within GFF6470at 47.505 kb on - strand, within GFF6470at 47.505 kb on - strand, within GFF6470at 47.505 kb on - strand, within GFF6470

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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45,427 + GFF6468 0.17 +1.9
45,428 - GFF6468 0.17 -0.5
45,428 - GFF6468 0.17 -2.8
45,428 - GFF6468 0.17 +0.3
45,428 - GFF6468 0.17 -0.1
45,445 + GFF6468 0.19 +1.2
45,445 + GFF6468 0.19 +0.7
45,445 + GFF6468 0.19 -1.5
45,445 + GFF6468 0.19 +0.1
45,445 + GFF6468 0.19 +0.7
45,445 + GFF6468 0.19 +0.1
45,790 + GFF6468 0.54 -0.3
45,791 - GFF6468 0.55 +0.4
45,791 - GFF6468 0.55 -0.1
46,222 + -0.7
46,223 - -0.1
46,223 - -1.2
46,405 + GFF6469 0.36 -1.3
46,405 + GFF6469 0.36 +0.1
46,405 + GFF6469 0.36 -2.9
46,405 + GFF6469 0.36 -1.5
46,405 + GFF6469 0.36 -0.5
46,405 + GFF6469 0.36 -2.6
46,405 + GFF6469 0.36 -2.3
46,405 + GFF6469 0.36 -1.5
46,406 - GFF6469 0.36 +0.4
46,406 - GFF6469 0.36 +0.6
46,406 - GFF6469 0.36 +0.6
46,406 - GFF6469 0.36 -0.5
46,465 - GFF6469 0.48 -2.8
46,563 + GFF6469 0.68 -3.9
46,626 + GFF6469 0.81 -0.5
46,626 + GFF6469 0.81 -3.4
46,680 + -1.7
46,681 - +1.1
46,681 - +0.9
46,847 + GFF6470 0.10 +1.2
46,899 + GFF6470 0.14 +0.8
46,899 + GFF6470 0.14 +0.3
46,899 + GFF6470 0.14 +2.0
46,900 - GFF6470 0.14 -0.3
46,900 - GFF6470 0.14 -1.0
47,115 - GFF6470 0.31 -1.4
47,134 + GFF6470 0.33 +1.0
47,135 - GFF6470 0.33 +1.6
47,135 - GFF6470 0.33 -1.6
47,135 - GFF6470 0.33 +0.0
47,183 + GFF6470 0.36 -1.7
47,187 - GFF6470 0.37 +0.3
47,285 + GFF6470 0.44 -2.1
47,285 + GFF6470 0.44 -1.9
47,285 + GFF6470 0.44 -2.4
47,285 + GFF6470 0.44 -0.1
47,286 - GFF6470 0.44 +0.1
47,286 - GFF6470 0.44 +1.5
47,402 + GFF6470 0.54 -3.0
47,402 + GFF6470 0.54 -2.3
47,403 - GFF6470 0.54 -1.9
47,403 - GFF6470 0.54 -2.9
47,403 - GFF6470 0.54 -0.1
47,450 + GFF6470 0.57 +0.3
47,450 + GFF6470 0.57 +2.3
47,450 + GFF6470 0.57 -2.0
47,451 - GFF6470 0.57 -1.6
47,478 - GFF6470 0.59 +0.3
47,478 - GFF6470 0.59 +1.1
47,504 + GFF6470 0.62 +1.9
47,504 + GFF6470 0.62 -0.7
47,504 + GFF6470 0.62 -0.9
47,504 + GFF6470 0.62 -0.9
47,505 - GFF6470 0.62 +0.3
47,505 - GFF6470 0.62 +1.4
47,505 - GFF6470 0.62 -0.1
47,505 - GFF6470 0.62 +1.4
47,505 - GFF6470 0.62 -0.6
47,505 - GFF6470 0.62 +0.3

Or see this region's nucleotide sequence