Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF63 and GFF64 overlap by 4 nucleotides GFF64 and GFF65 are separated by 35 nucleotides GFF65 and GFF66 are separated by 22 nucleotides
GFF63 - Putative glycosyltransferase, at 79,430 to 80,512
GFF63
GFF64 - hypothetical protein, at 80,509 to 81,462
GFF64
GFF65 - hypothetical protein, at 81,498 to 82,433
GFF65
GFF66 - hypothetical protein, at 82,456 to 83,709
GFF66
Position (kb) 80
81
82 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 79.574 kb on + strand, within GFF63 at 79.574 kb on + strand, within GFF63 at 79.575 kb on - strand, within GFF63 at 79.575 kb on - strand, within GFF63 at 79.628 kb on + strand, within GFF63 at 79.628 kb on + strand, within GFF63 at 79.629 kb on - strand, within GFF63 at 79.629 kb on - strand, within GFF63 at 79.629 kb on - strand, within GFF63 at 79.637 kb on + strand, within GFF63 at 79.673 kb on + strand, within GFF63 at 79.673 kb on + strand, within GFF63 at 79.691 kb on + strand, within GFF63 at 79.757 kb on + strand, within GFF63 at 79.757 kb on + strand, within GFF63 at 79.757 kb on + strand, within GFF63 at 79.758 kb on - strand, within GFF63 at 79.758 kb on - strand, within GFF63 at 79.758 kb on - strand, within GFF63 at 79.758 kb on - strand, within GFF63 at 79.758 kb on - strand, within GFF63 at 79.758 kb on - strand, within GFF63 at 79.766 kb on + strand, within GFF63 at 79.776 kb on - strand, within GFF63 at 80.000 kb on + strand, within GFF63 at 80.006 kb on + strand, within GFF63 at 80.006 kb on + strand, within GFF63 at 80.006 kb on + strand, within GFF63 at 80.007 kb on - strand, within GFF63 at 80.007 kb on - strand, within GFF63 at 80.202 kb on - strand, within GFF63 at 80.202 kb on - strand, within GFF63 at 80.369 kb on + strand, within GFF63 at 80.369 kb on + strand, within GFF63 at 80.370 kb on - strand, within GFF63 at 80.384 kb on + strand, within GFF63 at 80.462 kb on + strand at 80.463 kb on - strand at 80.463 kb on - strand at 80.642 kb on - strand, within GFF64 at 80.642 kb on - strand, within GFF64 at 80.642 kb on - strand, within GFF64 at 80.765 kb on - strand, within GFF64 at 80.765 kb on - strand, within GFF64 at 80.887 kb on + strand, within GFF64 at 80.888 kb on - strand, within GFF64 at 80.888 kb on - strand, within GFF64 at 81.058 kb on + strand, within GFF64 at 81.058 kb on + strand, within GFF64 at 81.058 kb on + strand, within GFF64 at 81.058 kb on + strand, within GFF64 at 81.058 kb on + strand, within GFF64 at 81.059 kb on - strand, within GFF64 at 81.059 kb on - strand, within GFF64 at 81.214 kb on + strand, within GFF64 at 81.214 kb on + strand, within GFF64 at 81.214 kb on + strand, within GFF64 at 81.215 kb on - strand, within GFF64 at 81.215 kb on - strand, within GFF64 at 81.215 kb on - strand, within GFF64 at 81.477 kb on + strand at 81.477 kb on + strand at 81.477 kb on + strand at 81.477 kb on + strand at 81.477 kb on + strand at 81.477 kb on + strand at 81.477 kb on + strand at 81.477 kb on + strand at 81.478 kb on - strand at 81.478 kb on - strand at 81.478 kb on - strand at 81.478 kb on - strand at 81.478 kb on - strand at 81.481 kb on + strand at 81.482 kb on - strand at 81.482 kb on - strand at 81.506 kb on + strand at 81.630 kb on + strand, within GFF65 at 81.652 kb on - strand, within GFF65 at 81.652 kb on - strand, within GFF65 at 81.652 kb on - strand, within GFF65 at 81.706 kb on - strand, within GFF65 at 81.706 kb on - strand, within GFF65 at 81.723 kb on + strand, within GFF65 at 81.723 kb on + strand, within GFF65 at 81.724 kb on - strand, within GFF65 at 81.724 kb on - strand, within GFF65 at 81.724 kb on - strand, within GFF65 at 81.724 kb on - strand, within GFF65 at 81.843 kb on + strand, within GFF65 at 81.843 kb on + strand, within GFF65 at 81.844 kb on - strand, within GFF65 at 81.844 kb on - strand, within GFF65 at 81.844 kb on - strand, within GFF65 at 81.844 kb on - strand, within GFF65 at 81.844 kb on - strand, within GFF65 at 81.948 kb on + strand, within GFF65 at 81.948 kb on + strand, within GFF65 at 81.948 kb on + strand, within GFF65 at 81.948 kb on + strand, within GFF65 at 81.948 kb on + strand, within GFF65 at 81.949 kb on - strand, within GFF65 at 81.949 kb on - strand, within GFF65 at 81.949 kb on - strand, within GFF65 at 82.044 kb on + strand, within GFF65 at 82.045 kb on - strand, within GFF65 at 82.323 kb on + strand, within GFF65 at 82.323 kb on + strand, within GFF65 at 82.324 kb on - strand, within GFF65 at 82.431 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 79,574 + GFF63 0.13 +1.2 79,574 + GFF63 0.13 +0.5 79,575 - GFF63 0.13 -1.6 79,575 - GFF63 0.13 +0.7 79,628 + GFF63 0.18 +0.6 79,628 + GFF63 0.18 -1.6 79,629 - GFF63 0.18 +0.4 79,629 - GFF63 0.18 -1.9 79,629 - GFF63 0.18 +1.0 79,637 + GFF63 0.19 -1.5 79,673 + GFF63 0.22 +2.3 79,673 + GFF63 0.22 -2.6 79,691 + GFF63 0.24 +0.1 79,757 + GFF63 0.30 -1.2 79,757 + GFF63 0.30 -0.6 79,757 + GFF63 0.30 -0.0 79,758 - GFF63 0.30 -1.2 79,758 - GFF63 0.30 +1.3 79,758 - GFF63 0.30 +0.9 79,758 - GFF63 0.30 -1.6 79,758 - GFF63 0.30 +0.0 79,758 - GFF63 0.30 -2.0 79,766 + GFF63 0.31 -0.4 79,776 - GFF63 0.32 -1.5 80,000 + GFF63 0.53 +1.3 80,006 + GFF63 0.53 +1.1 80,006 + GFF63 0.53 +0.3 80,006 + GFF63 0.53 -3.0 80,007 - GFF63 0.53 -1.3 80,007 - GFF63 0.53 -1.2 80,202 - GFF63 0.71 -2.2 80,202 - GFF63 0.71 +1.3 80,369 + GFF63 0.87 -1.0 80,369 + GFF63 0.87 -1.7 80,370 - GFF63 0.87 -1.9 80,384 + GFF63 0.88 -0.9 80,462 + +1.5 80,463 - -1.0 80,463 - +1.9 80,642 - GFF64 0.14 +0.4 80,642 - GFF64 0.14 +0.6 80,642 - GFF64 0.14 +2.1 80,765 - GFF64 0.27 -2.2 80,765 - GFF64 0.27 -2.9 80,887 + GFF64 0.40 +0.2 80,888 - GFF64 0.40 -1.0 80,888 - GFF64 0.40 -2.7 81,058 + GFF64 0.58 -1.3 81,058 + GFF64 0.58 +0.5 81,058 + GFF64 0.58 -0.4 81,058 + GFF64 0.58 +0.0 81,058 + GFF64 0.58 +0.9 81,059 - GFF64 0.58 -1.0 81,059 - GFF64 0.58 +1.6 81,214 + GFF64 0.74 +0.8 81,214 + GFF64 0.74 -1.2 81,214 + GFF64 0.74 -1.0 81,215 - GFF64 0.74 -1.7 81,215 - GFF64 0.74 +1.7 81,215 - GFF64 0.74 +0.7 81,477 + +0.2 81,477 + +0.6 81,477 + +0.6 81,477 + -1.6 81,477 + +0.4 81,477 + +0.8 81,477 + -1.0 81,477 + +1.1 81,478 - -1.0 81,478 - -1.9 81,478 - -0.7 81,478 - -0.9 81,478 - +0.0 81,481 + -0.0 81,482 - -0.7 81,482 - -0.2 81,506 + +0.1 81,630 + GFF65 0.14 -1.4 81,652 - GFF65 0.16 +1.3 81,652 - GFF65 0.16 +1.8 81,652 - GFF65 0.16 +0.2 81,706 - GFF65 0.22 +0.9 81,706 - GFF65 0.22 -2.1 81,723 + GFF65 0.24 -1.0 81,723 + GFF65 0.24 -0.7 81,724 - GFF65 0.24 +0.9 81,724 - GFF65 0.24 +0.0 81,724 - GFF65 0.24 -1.2 81,724 - GFF65 0.24 +0.1 81,843 + GFF65 0.37 +0.1 81,843 + GFF65 0.37 -1.4 81,844 - GFF65 0.37 +3.1 81,844 - GFF65 0.37 -1.0 81,844 - GFF65 0.37 +1.8 81,844 - GFF65 0.37 -3.1 81,844 - GFF65 0.37 -3.3 81,948 + GFF65 0.48 -1.9 81,948 + GFF65 0.48 +0.6 81,948 + GFF65 0.48 -1.5 81,948 + GFF65 0.48 +0.5 81,948 + GFF65 0.48 +0.4 81,949 - GFF65 0.48 +0.0 81,949 - GFF65 0.48 -1.1 81,949 - GFF65 0.48 -2.1 82,044 + GFF65 0.58 -2.7 82,045 - GFF65 0.58 -1.4 82,323 + GFF65 0.88 -2.1 82,323 + GFF65 0.88 +0.0 82,324 - GFF65 0.88 +1.0 82,431 + +0.4
Or see this region's nucleotide sequence