Strain Fitness in Variovorax sp. SCN45 around GFF6391

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6389 and GFF6390 are separated by 9 nucleotidesGFF6390 and GFF6391 overlap by 4 nucleotidesGFF6391 and GFF6392 overlap by 4 nucleotides GFF6389 - Amidohydrolase domain protein, at 61,667 to 62,866 GFF6389 GFF6390 - GtrA-like protein, at 62,876 to 63,277 GFF6390 GFF6391 - RfbJ protein, at 63,274 to 64,242 GFF6391 GFF6392 - hypothetical protein, at 64,239 to 66,074 GFF6392 Position (kb) 63 64 65Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 62.368 kb on + strand, within GFF6389at 62.369 kb on - strand, within GFF6389at 62.369 kb on - strand, within GFF6389at 62.369 kb on - strand, within GFF6389at 62.908 kb on - strandat 62.908 kb on - strandat 63.009 kb on + strand, within GFF6390at 63.009 kb on + strand, within GFF6390at 63.009 kb on + strand, within GFF6390at 63.009 kb on + strand, within GFF6390at 63.009 kb on + strand, within GFF6390at 63.009 kb on + strand, within GFF6390at 63.009 kb on + strand, within GFF6390at 63.009 kb on + strand, within GFF6390at 63.010 kb on - strand, within GFF6390at 63.010 kb on - strand, within GFF6390at 63.010 kb on - strand, within GFF6390at 63.010 kb on - strand, within GFF6390at 63.018 kb on + strand, within GFF6390at 63.018 kb on + strand, within GFF6390at 63.019 kb on - strand, within GFF6390at 63.019 kb on - strand, within GFF6390at 63.055 kb on - strand, within GFF6390at 63.055 kb on - strand, within GFF6390at 63.063 kb on + strand, within GFF6390at 63.063 kb on + strand, within GFF6390at 63.064 kb on - strand, within GFF6390at 63.064 kb on - strand, within GFF6390at 63.111 kb on + strand, within GFF6390at 63.111 kb on + strand, within GFF6390at 63.111 kb on + strand, within GFF6390at 63.112 kb on - strand, within GFF6390at 63.112 kb on - strand, within GFF6390at 63.112 kb on - strand, within GFF6390at 63.175 kb on - strand, within GFF6390at 63.202 kb on - strand, within GFF6390at 63.202 kb on - strand, within GFF6390at 63.202 kb on - strand, within GFF6390at 63.314 kb on + strandat 63.314 kb on + strandat 63.314 kb on + strandat 63.315 kb on - strandat 63.315 kb on - strandat 63.315 kb on - strandat 63.455 kb on + strand, within GFF6391at 63.455 kb on + strand, within GFF6391at 63.455 kb on + strand, within GFF6391at 63.455 kb on + strand, within GFF6391at 63.455 kb on + strand, within GFF6391at 63.455 kb on + strand, within GFF6391at 63.455 kb on + strand, within GFF6391at 63.456 kb on - strand, within GFF6391at 63.456 kb on - strand, within GFF6391at 63.456 kb on - strand, within GFF6391at 63.456 kb on - strand, within GFF6391at 63.456 kb on - strand, within GFF6391at 63.456 kb on - strand, within GFF6391at 63.456 kb on - strand, within GFF6391at 63.456 kb on - strand, within GFF6391at 63.456 kb on - strand, within GFF6391at 63.456 kb on - strand, within GFF6391at 63.514 kb on + strand, within GFF6391at 63.591 kb on - strand, within GFF6391at 63.632 kb on + strand, within GFF6391at 63.632 kb on + strand, within GFF6391at 63.633 kb on - strand, within GFF6391at 63.633 kb on - strand, within GFF6391at 63.633 kb on - strand, within GFF6391at 63.633 kb on - strand, within GFF6391at 63.633 kb on - strand, within GFF6391at 63.653 kb on + strand, within GFF6391at 63.653 kb on + strand, within GFF6391at 63.654 kb on - strand, within GFF6391at 63.848 kb on + strand, within GFF6391at 63.950 kb on + strand, within GFF6391at 63.951 kb on - strand, within GFF6391at 63.951 kb on - strand, within GFF6391at 63.977 kb on + strand, within GFF6391at 63.977 kb on + strand, within GFF6391at 63.978 kb on - strand, within GFF6391at 63.978 kb on - strand, within GFF6391at 64.181 kb on + strandat 64.181 kb on + strandat 64.181 kb on + strandat 64.181 kb on + strandat 64.181 kb on + strandat 64.182 kb on - strandat 64.182 kb on - strandat 64.182 kb on - strandat 64.182 kb on - strandat 64.182 kb on - strandat 64.182 kb on - strandat 64.182 kb on - strandat 64.182 kb on - strandat 64.182 kb on - strandat 64.260 kb on - strandat 64.264 kb on + strandat 64.303 kb on + strandat 64.303 kb on + strandat 64.303 kb on + strandat 64.303 kb on + strandat 64.303 kb on + strandat 64.304 kb on - strandat 64.304 kb on - strandat 64.429 kb on + strand, within GFF6392at 64.429 kb on + strand, within GFF6392at 64.429 kb on + strand, within GFF6392at 64.430 kb on - strand, within GFF6392at 64.474 kb on + strand, within GFF6392at 64.475 kb on - strand, within GFF6392at 64.475 kb on - strand, within GFF6392at 64.477 kb on + strand, within GFF6392at 64.477 kb on + strand, within GFF6392at 64.477 kb on + strand, within GFF6392at 64.477 kb on + strand, within GFF6392at 64.477 kb on + strand, within GFF6392at 64.477 kb on + strand, within GFF6392at 64.478 kb on - strand, within GFF6392at 64.478 kb on - strand, within GFF6392at 64.478 kb on - strand, within GFF6392at 64.478 kb on - strand, within GFF6392at 64.478 kb on - strand, within GFF6392at 64.504 kb on + strand, within GFF6392at 64.505 kb on - strand, within GFF6392at 64.505 kb on - strand, within GFF6392at 64.534 kb on + strand, within GFF6392at 64.534 kb on + strand, within GFF6392at 64.534 kb on + strand, within GFF6392at 64.534 kb on + strand, within GFF6392at 64.534 kb on + strand, within GFF6392at 64.534 kb on + strand, within GFF6392at 64.535 kb on - strand, within GFF6392at 64.535 kb on - strand, within GFF6392at 64.535 kb on - strand, within GFF6392at 64.535 kb on - strand, within GFF6392at 64.864 kb on + strand, within GFF6392at 64.865 kb on - strand, within GFF6392at 64.906 kb on + strand, within GFF6392at 64.907 kb on - strand, within GFF6392at 64.907 kb on - strand, within GFF6392at 64.907 kb on - strand, within GFF6392at 64.907 kb on - strand, within GFF6392at 65.041 kb on + strand, within GFF6392at 65.042 kb on - strand, within GFF6392at 65.042 kb on - strand, within GFF6392at 65.128 kb on + strand, within GFF6392at 65.129 kb on - strand, within GFF6392at 65.129 kb on - strand, within GFF6392at 65.129 kb on - strand, within GFF6392at 65.129 kb on - strand, within GFF6392at 65.134 kb on + strand, within GFF6392at 65.134 kb on + strand, within GFF6392at 65.134 kb on + strand, within GFF6392at 65.134 kb on + strand, within GFF6392at 65.134 kb on + strand, within GFF6392at 65.134 kb on + strand, within GFF6392at 65.135 kb on - strand, within GFF6392at 65.135 kb on - strand, within GFF6392at 65.242 kb on + strand, within GFF6392

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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62,368 + GFF6389 0.58 +1.0
62,369 - GFF6389 0.58 +0.0
62,369 - GFF6389 0.58 -3.3
62,369 - GFF6389 0.58 -3.6
62,908 - -1.3
62,908 - -0.6
63,009 + GFF6390 0.33 -1.3
63,009 + GFF6390 0.33 -1.4
63,009 + GFF6390 0.33 +1.4
63,009 + GFF6390 0.33 -1.9
63,009 + GFF6390 0.33 +3.1
63,009 + GFF6390 0.33 +1.3
63,009 + GFF6390 0.33 +0.4
63,009 + GFF6390 0.33 -0.2
63,010 - GFF6390 0.33 -2.0
63,010 - GFF6390 0.33 -0.8
63,010 - GFF6390 0.33 -0.6
63,010 - GFF6390 0.33 +0.4
63,018 + GFF6390 0.35 -2.5
63,018 + GFF6390 0.35 +1.4
63,019 - GFF6390 0.36 -4.0
63,019 - GFF6390 0.36 +0.8
63,055 - GFF6390 0.45 -2.0
63,055 - GFF6390 0.45 -2.5
63,063 + GFF6390 0.47 +1.8
63,063 + GFF6390 0.47 +1.7
63,064 - GFF6390 0.47 +0.2
63,064 - GFF6390 0.47 -0.6
63,111 + GFF6390 0.58 +0.2
63,111 + GFF6390 0.58 +2.4
63,111 + GFF6390 0.58 -1.1
63,112 - GFF6390 0.59 -1.4
63,112 - GFF6390 0.59 -0.0
63,112 - GFF6390 0.59 +0.1
63,175 - GFF6390 0.74 -2.6
63,202 - GFF6390 0.81 +0.6
63,202 - GFF6390 0.81 -1.6
63,202 - GFF6390 0.81 -0.7
63,314 + +1.8
63,314 + +2.7
63,314 + -1.5
63,315 - +1.0
63,315 - -0.2
63,315 - -2.0
63,455 + GFF6391 0.19 -2.4
63,455 + GFF6391 0.19 +2.4
63,455 + GFF6391 0.19 -2.6
63,455 + GFF6391 0.19 +0.8
63,455 + GFF6391 0.19 +0.6
63,455 + GFF6391 0.19 -0.8
63,455 + GFF6391 0.19 -2.0
63,456 - GFF6391 0.19 -1.7
63,456 - GFF6391 0.19 +1.2
63,456 - GFF6391 0.19 -0.9
63,456 - GFF6391 0.19 -1.9
63,456 - GFF6391 0.19 +2.0
63,456 - GFF6391 0.19 +0.6
63,456 - GFF6391 0.19 -0.7
63,456 - GFF6391 0.19 -2.3
63,456 - GFF6391 0.19 +0.4
63,456 - GFF6391 0.19 -2.1
63,514 + GFF6391 0.25 -0.3
63,591 - GFF6391 0.33 -1.2
63,632 + GFF6391 0.37 -1.2
63,632 + GFF6391 0.37 -1.9
63,633 - GFF6391 0.37 +2.8
63,633 - GFF6391 0.37 +0.7
63,633 - GFF6391 0.37 -4.6
63,633 - GFF6391 0.37 +0.9
63,633 - GFF6391 0.37 +0.3
63,653 + GFF6391 0.39 -1.4
63,653 + GFF6391 0.39 -1.7
63,654 - GFF6391 0.39 -1.5
63,848 + GFF6391 0.59 +1.5
63,950 + GFF6391 0.70 -0.4
63,951 - GFF6391 0.70 +0.8
63,951 - GFF6391 0.70 -1.7
63,977 + GFF6391 0.73 -2.0
63,977 + GFF6391 0.73 +2.4
63,978 - GFF6391 0.73 -1.7
63,978 - GFF6391 0.73 -0.7
64,181 + -0.2
64,181 + +0.8
64,181 + +3.0
64,181 + +0.3
64,181 + +1.0
64,182 - +2.7
64,182 - -0.6
64,182 - +1.1
64,182 - -1.6
64,182 - +1.1
64,182 - +0.0
64,182 - +1.0
64,182 - -0.9
64,182 - -0.4
64,260 - -1.6
64,264 + +0.7
64,303 + -0.9
64,303 + +1.0
64,303 + +0.7
64,303 + -1.7
64,303 + -2.3
64,304 - -1.3
64,304 - -2.0
64,429 + GFF6392 0.10 -2.4
64,429 + GFF6392 0.10 +0.8
64,429 + GFF6392 0.10 +0.5
64,430 - GFF6392 0.10 +0.9
64,474 + GFF6392 0.13 -2.1
64,475 - GFF6392 0.13 -0.4
64,475 - GFF6392 0.13 -3.0
64,477 + GFF6392 0.13 +0.1
64,477 + GFF6392 0.13 -1.1
64,477 + GFF6392 0.13 -0.7
64,477 + GFF6392 0.13 +0.4
64,477 + GFF6392 0.13 +0.1
64,477 + GFF6392 0.13 -1.8
64,478 - GFF6392 0.13 +0.0
64,478 - GFF6392 0.13 +0.1
64,478 - GFF6392 0.13 +0.6
64,478 - GFF6392 0.13 +0.1
64,478 - GFF6392 0.13 -0.0
64,504 + GFF6392 0.14 -2.4
64,505 - GFF6392 0.14 -0.2
64,505 - GFF6392 0.14 -2.0
64,534 + GFF6392 0.16 -3.3
64,534 + GFF6392 0.16 -2.2
64,534 + GFF6392 0.16 -0.1
64,534 + GFF6392 0.16 +0.5
64,534 + GFF6392 0.16 +1.5
64,534 + GFF6392 0.16 -0.1
64,535 - GFF6392 0.16 -0.4
64,535 - GFF6392 0.16 -0.9
64,535 - GFF6392 0.16 +0.6
64,535 - GFF6392 0.16 -3.1
64,864 + GFF6392 0.34 -3.0
64,865 - GFF6392 0.34 +3.0
64,906 + GFF6392 0.36 +0.7
64,907 - GFF6392 0.36 -1.0
64,907 - GFF6392 0.36 +0.1
64,907 - GFF6392 0.36 -1.9
64,907 - GFF6392 0.36 -0.2
65,041 + GFF6392 0.44 -0.7
65,042 - GFF6392 0.44 -1.9
65,042 - GFF6392 0.44 -0.5
65,128 + GFF6392 0.48 +0.3
65,129 - GFF6392 0.48 +0.1
65,129 - GFF6392 0.48 +0.5
65,129 - GFF6392 0.48 -0.7
65,129 - GFF6392 0.48 +0.4
65,134 + GFF6392 0.49 -3.0
65,134 + GFF6392 0.49 +0.6
65,134 + GFF6392 0.49 +0.7
65,134 + GFF6392 0.49 +0.0
65,134 + GFF6392 0.49 +1.5
65,134 + GFF6392 0.49 -3.3
65,135 - GFF6392 0.49 +2.3
65,135 - GFF6392 0.49 +0.8
65,242 + GFF6392 0.55 -1.4

Or see this region's nucleotide sequence