Strain Fitness in Variovorax sp. SCN45 around GFF6349

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6347 and GFF6348 are separated by 107 nucleotidesGFF6348 and GFF6349 are separated by 36 nucleotidesGFF6349 and GFF6350 are separated by 78 nucleotides GFF6347 - AAA+ ATPase superfamily protein YifB/ComM, associated with DNA recombination, at 9,530 to 10,933 GFF6347 GFF6348 - no description, at 11,041 to 11,322 GFF6348 GFF6349 - no description, at 11,359 to 11,658 GFF6349 GFF6350 - T6SS Serine/threonine protein kinase (EC 2.7.11.1) PpkA, at 11,737 to 13,650 GFF6350 Position (kb) 11 12Strain fitness (log2 ratio) -2 -1 0 1 2 3at 10.700 kb on + strand, within GFF6347at 10.701 kb on - strand, within GFF6347at 10.904 kb on + strandat 10.972 kb on + strandat 10.972 kb on + strandat 10.973 kb on - strandat 10.973 kb on - strandat 10.973 kb on - strandat 10.973 kb on - strandat 10.973 kb on - strandat 10.973 kb on - strandat 11.113 kb on + strand, within GFF6348at 11.113 kb on + strand, within GFF6348at 11.113 kb on + strand, within GFF6348at 11.113 kb on + strand, within GFF6348at 11.113 kb on + strand, within GFF6348at 11.113 kb on + strand, within GFF6348at 11.114 kb on - strand, within GFF6348at 11.114 kb on - strand, within GFF6348at 11.114 kb on - strand, within GFF6348at 11.114 kb on - strand, within GFF6348at 11.114 kb on - strand, within GFF6348at 11.141 kb on + strand, within GFF6348at 11.142 kb on - strand, within GFF6348at 11.142 kb on - strand, within GFF6348at 11.172 kb on - strand, within GFF6348at 11.251 kb on + strand, within GFF6348at 11.251 kb on + strand, within GFF6348at 11.251 kb on + strand, within GFF6348at 11.251 kb on + strand, within GFF6348at 11.252 kb on - strand, within GFF6348at 11.252 kb on - strand, within GFF6348at 11.252 kb on - strand, within GFF6348at 11.252 kb on - strand, within GFF6348at 11.252 kb on - strand, within GFF6348at 11.299 kb on + strandat 11.300 kb on - strandat 11.300 kb on - strandat 11.320 kb on + strandat 11.321 kb on - strandat 11.405 kb on - strand, within GFF6349at 11.515 kb on + strand, within GFF6349at 11.515 kb on + strand, within GFF6349at 11.516 kb on - strand, within GFF6349at 11.559 kb on - strand, within GFF6349at 11.559 kb on - strand, within GFF6349at 11.671 kb on - strandat 11.671 kb on - strandat 11.738 kb on + strandat 11.738 kb on + strandat 11.739 kb on - strandat 11.801 kb on + strandat 11.802 kb on - strandat 11.837 kb on + strandat 11.837 kb on + strandat 11.837 kb on + strandat 11.837 kb on + strandat 11.838 kb on - strandat 11.838 kb on - strandat 11.838 kb on - strandat 11.838 kb on - strandat 12.068 kb on + strand, within GFF6350at 12.069 kb on - strand, within GFF6350at 12.069 kb on - strand, within GFF6350at 12.077 kb on + strand, within GFF6350at 12.077 kb on + strand, within GFF6350at 12.378 kb on + strand, within GFF6350

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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10,700 + GFF6347 0.83 +0.8
10,701 - GFF6347 0.83 +1.1
10,904 + +1.5
10,972 + +1.2
10,972 + -0.6
10,973 - -2.7
10,973 - -0.9
10,973 - +1.0
10,973 - +0.8
10,973 - -0.5
10,973 - -0.9
11,113 + GFF6348 0.26 +1.3
11,113 + GFF6348 0.26 +0.6
11,113 + GFF6348 0.26 -1.2
11,113 + GFF6348 0.26 -0.6
11,113 + GFF6348 0.26 -0.1
11,113 + GFF6348 0.26 -1.6
11,114 - GFF6348 0.26 +1.9
11,114 - GFF6348 0.26 +2.4
11,114 - GFF6348 0.26 +0.4
11,114 - GFF6348 0.26 +0.3
11,114 - GFF6348 0.26 -2.2
11,141 + GFF6348 0.35 -2.0
11,142 - GFF6348 0.36 +0.4
11,142 - GFF6348 0.36 -0.1
11,172 - GFF6348 0.46 +3.0
11,251 + GFF6348 0.74 +0.4
11,251 + GFF6348 0.74 -0.6
11,251 + GFF6348 0.74 +1.4
11,251 + GFF6348 0.74 +1.3
11,252 - GFF6348 0.75 -0.9
11,252 - GFF6348 0.75 -2.0
11,252 - GFF6348 0.75 -0.4
11,252 - GFF6348 0.75 -2.0
11,252 - GFF6348 0.75 -2.2
11,299 + +0.4
11,300 - +0.8
11,300 - +0.8
11,320 + +0.1
11,321 - +0.8
11,405 - GFF6349 0.15 -1.4
11,515 + GFF6349 0.52 -0.0
11,515 + GFF6349 0.52 +0.9
11,516 - GFF6349 0.52 +0.3
11,559 - GFF6349 0.67 +0.6
11,559 - GFF6349 0.67 +0.7
11,671 - -1.9
11,671 - -0.1
11,738 + -0.7
11,738 + -1.2
11,739 - -1.8
11,801 + -2.1
11,802 - -0.7
11,837 + -0.4
11,837 + -0.7
11,837 + +1.5
11,837 + -0.1
11,838 - +0.9
11,838 - -0.7
11,838 - +0.1
11,838 - -1.6
12,068 + GFF6350 0.17 -1.0
12,069 - GFF6350 0.17 +0.0
12,069 - GFF6350 0.17 -0.7
12,077 + GFF6350 0.18 +0.7
12,077 + GFF6350 0.18 +1.0
12,378 + GFF6350 0.33 -1.5

Or see this region's nucleotide sequence