Strain Fitness in Variovorax sp. SCN45 around GFF6337

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
1,063	+		GFF6335	0.39	-0.1
1,063	+		GFF6335	0.39	-0.7
1,063	+		GFF6335	0.39	+2.6
1,130	+		GFF6335	0.58	+2.1
1,130	+		GFF6335	0.58	-0.2
1,131	-		GFF6335	0.58	-0.9
1,131	-		GFF6335	0.58	-1.5
1,412	+				-1.2
1,480	+		GFF6336	0.14	-2.0
1,508	+		GFF6336	0.19	-0.6
1,532	+		GFF6336	0.24	-0.1
1,532	+		GFF6336	0.24	+1.4
1,533	-		GFF6336	0.24	-0.9
1,533	-		GFF6336	0.24	+1.3
1,628	+		GFF6336	0.43	-0.4
2,005	+				-1.0
2,005	+				-0.5
2,006	-				+0.3
2,015	+				+0.7
2,015	+				-1.7
2,015	+				+1.2
2,046	+				-1.6
2,046	+				+3.4
2,060	+				+0.5
2,061	-				+0.9
2,061	-				-0.7
2,061	-				-0.4
2,061	-				+2.7
2,115	+				+0.3
2,116	-				-0.9
2,176	+		GFF6337	0.15	-0.2
2,176	+		GFF6337	0.15	+0.4
2,177	-		GFF6337	0.15	+1.7
2,177	-		GFF6337	0.15	-2.0
2,177	-		GFF6337	0.15	-0.0
2,177	-		GFF6337	0.15	+0.7
2,341	+		GFF6337	0.35	+0.3
2,341	+		GFF6337	0.35	-0.2
2,342	-		GFF6337	0.35	-1.2
2,342	-		GFF6337	0.35	-0.2
2,374	+		GFF6337	0.39	-0.3
2,375	-		GFF6337	0.39	+0.1
2,375	-		GFF6337	0.39	+2.4
2,389	+		GFF6337	0.41	-0.2
2,389	+		GFF6337	0.41	+1.2
2,389	+		GFF6337	0.41	+2.4
2,389	+		GFF6337	0.41	-0.2
2,389	+		GFF6337	0.41	+0.1
2,390	-		GFF6337	0.41	-2.0
2,390	-		GFF6337	0.41	-2.5
2,390	-		GFF6337	0.41	-1.6
2,390	-		GFF6337	0.41	+1.3
2,390	-		GFF6337	0.41	+0.4
2,390	-		GFF6337	0.41	-0.4
2,409	-		GFF6337	0.43	-0.3
2,409	-		GFF6337	0.43	-0.2
2,467	-		GFF6337	0.50	-1.4
2,688	+		GFF6337	0.76	+1.8
2,689	-		GFF6337	0.76	+0.1
2,689	-		GFF6337	0.76	-1.3
2,814	+				-2.0
2,814	+				-0.2
2,983	+		GFF6338	0.77	+0.3
2,983	+		GFF6338	0.77	+1.1
2,983	+		GFF6338	0.77	+0.3
2,983	+		GFF6338	0.77	-0.1
2,984	-		GFF6338	0.78	+0.8
2,984	-		GFF6338	0.78	-1.7
2,984	-		GFF6338	0.78	+1.6
3,006	+				+0.7
3,162	-				+1.4
3,162	-				+1.3
3,162	-				-0.2
3,359	+				+0.2
3,360	-				-0.4
3,385	+				-0.2
3,396	+				-2.0
3,397	-				-0.5
3,399	+				+1.8
3,399	+				+0.8
3,568	+				-0.7
3,568	+				-0.2
3,568	+				+2.0
3,569	-				+1.1
3,569	-				+0.0
3,569	-				-4.0
3,569	-				+1.4
3,569	-				+1.5
3,569	-				-0.2
3,635	-				+0.9
3,635	-				-1.2
3,635	-				+0.5
3,635	-				-0.3
3,635	-				-2.1
3,635	-				+0.0
3,639	+				-2.5
3,639	+				+0.9
3,640	-				+1.6
3,686	-				+0.1
3,737	+				+2.8
3,737	+				-0.7
3,738	-				+0.7
3,774	-				+2.0
3,780	-				-3.3
3,797	+				+1.1
3,797	+				+0.3
3,798	-				-1.8