Strain Fitness in Variovorax sp. SCN45 around GFF6273

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
63,459	+		GFF6270	0.87	+1.6
63,459	+		GFF6270	0.87	-1.0
63,460	-		GFF6270	0.87	-1.4
63,460	-		GFF6270	0.87	+1.0
63,685	+				-1.3
63,685	+				+2.6
63,685	+				-1.3
63,686	-				-1.3
63,686	-				+1.0
63,686	-				-0.2
63,686	-				-1.2
63,686	-				-3.0
63,686	-				+0.4
63,703	+				-1.7
63,703	+				+0.5
63,704	-				-0.1
63,712	+		GFF6272	0.10	+0.9
63,712	+		GFF6272	0.10	-1.8
63,712	+		GFF6272	0.10	-2.3
63,713	-		GFF6272	0.11	-0.1
63,713	-		GFF6272	0.11	-2.5
63,713	-		GFF6272	0.11	-1.5
63,713	-		GFF6272	0.11	-0.3
63,713	-		GFF6272	0.11	+1.2
63,724	-		GFF6272	0.19	+0.6
63,724	-		GFF6272	0.19	+0.2
63,727	+		GFF6272	0.21	-0.5
63,727	+		GFF6272	0.21	-0.5
63,727	+		GFF6272	0.21	-1.6
63,728	-		GFF6272	0.22	-0.2
64,191	+		GFF6271	0.68	-0.8
64,192	-		GFF6271	0.68	-1.0
64,356	+				-1.5
64,356	+				-0.1
64,356	+				+2.2
64,357	-				+0.6
64,357	-				+2.1
64,357	-				-1.5
64,357	-				-0.6
64,357	-				-0.1
64,357	-				-0.4
64,589	+		GFF6273	0.35	-3.8
64,589	+		GFF6273	0.35	-4.1
64,589	+		GFF6273	0.35	-2.1
64,589	+		GFF6273	0.35	-0.6
64,589	+		GFF6273	0.35	-1.5
64,589	+		GFF6273	0.35	-3.5
64,590	-		GFF6273	0.35	-2.7
64,590	-		GFF6273	0.35	-1.1
64,590	-		GFF6273	0.35	-2.6
64,590	-		GFF6273	0.35	+3.2
64,590	-		GFF6273	0.35	-2.0
64,590	-		GFF6273	0.35	-1.2
64,877	+				+1.2
64,877	+				+0.2
64,878	-				-0.8
64,878	-				-1.6
64,944	+				-3.4
64,945	-				-0.6
64,945	-				-0.6
64,945	-				-0.9
64,945	-				-0.0
65,023	+				-0.1
65,023	+				-0.8
65,023	+				+1.9
65,024	-				-0.1
65,024	-				-0.1
65,024	-				-0.3
65,024	-				-2.1
65,024	-				-0.4
65,024	-				-1.1
65,024	-				-0.3
65,068	+		GFF6274	0.17	-0.0
65,068	+		GFF6274	0.17	+3.2
65,068	+		GFF6274	0.17	-0.3
65,069	-		GFF6274	0.17	-0.2
65,069	-		GFF6274	0.17	-0.0
65,069	-		GFF6274	0.17	-0.5
65,069	-		GFF6274	0.17	+1.2
65,248	+		GFF6274	0.53	+1.5
65,248	+		GFF6274	0.53	-2.6
65,458	+				-2.3
65,458	+				+1.2
65,458	+				-1.0
65,458	+				+0.7
65,458	+				+0.1
65,459	-				-2.4
65,459	-				-0.3
65,459	-				+0.4
65,459	-				-1.0
65,459	-				+2.2
65,459	-				+0.4
65,459	-				+1.4
65,459	-				-0.8
65,459	-				+0.2
65,529	+		GFF6275	0.17	+3.0
65,530	-		GFF6275	0.17	-2.5
65,562	+		GFF6275	0.27	-1.9
65,562	+		GFF6275	0.27	-3.0
65,562	+		GFF6275	0.27	-4.3
65,563	-		GFF6275	0.27	-2.0
65,563	-		GFF6275	0.27	-1.2
65,563	-		GFF6275	0.27	-0.7
65,563	-		GFF6275	0.27	-0.1
65,563	-		GFF6275	0.27	+1.5
65,571	+		GFF6275	0.30	-1.2
65,571	+		GFF6275	0.30	+2.0
65,571	+		GFF6275	0.30	-0.9
65,571	+		GFF6275	0.30	-1.1
65,571	+		GFF6275	0.30	-0.4
65,571	+		GFF6275	0.30	-1.3
65,572	-		GFF6275	0.30	+0.7
65,572	-		GFF6275	0.30	-0.4
65,572	-		GFF6275	0.30	-2.6
65,572	-		GFF6275	0.30	-1.8
65,572	-		GFF6275	0.30	-1.2
65,572	-		GFF6275	0.30	-1.1
65,572	-		GFF6275	0.30	-1.5
65,727	+		GFF6275	0.79	-0.2
65,727	+		GFF6275	0.79	-0.6
65,727	+		GFF6275	0.79	-0.2
65,727	+		GFF6275	0.79	-0.8
65,728	-		GFF6275	0.79	+1.2
65,728	-		GFF6275	0.79	-1.1
65,728	-		GFF6275	0.79	-1.0
65,728	-		GFF6275	0.79	-2.8
65,728	-		GFF6275	0.79	+1.1
65,728	-		GFF6275	0.79	-1.2
65,728	-		GFF6275	0.79	-0.3
65,728	-		GFF6275	0.79	-3.5
65,748	+		GFF6275	0.85	+0.0
65,749	-		GFF6275	0.85	+1.9
65,749	-		GFF6275	0.85	+0.5
65,749	-		GFF6275	0.85	-0.4