Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6151 and GFF6152 are separated by 92 nucleotides GFF6152 and GFF6153 are separated by 9 nucleotides GFF6153 and GFF6154 are separated by 183 nucleotides GFF6154 and GFF6155 are separated by 10 nucleotides
GFF6151 - Transcriptional regulator, LysR family, at 56,442 to 57,404
GFF6151
GFF6152 - hypothetical protein, at 57,497 to 57,874
GFF6152
GFF6153 - Transcriptional activator of acetoin/glycerol metabolism, at 57,884 to 59,026
GFF6153
GFF6154 - Aerobic carbon monoxide dehydrogenase (quinone), small chain (EC 1.2.5.3), at 59,210 to 59,707
GFF6154
GFF6155 - Aerobic carbon monoxide dehydrogenase (quinone), large chain (EC 1.2.5.3), at 59,718 to 62,108
GFF6155
Position (kb) 57
58
59
60 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 56.997 kb on + strand, within GFF6151 at 56.997 kb on + strand, within GFF6151 at 56.997 kb on + strand, within GFF6151 at 56.997 kb on + strand, within GFF6151 at 56.997 kb on + strand, within GFF6151 at 56.997 kb on + strand, within GFF6151 at 56.998 kb on - strand, within GFF6151 at 56.998 kb on - strand, within GFF6151 at 56.998 kb on - strand, within GFF6151 at 57.031 kb on - strand, within GFF6151 at 57.121 kb on - strand, within GFF6151 at 57.306 kb on + strand, within GFF6151 at 57.306 kb on + strand, within GFF6151 at 57.306 kb on + strand, within GFF6151 at 57.306 kb on + strand, within GFF6151 at 57.306 kb on + strand, within GFF6151 at 57.307 kb on - strand, within GFF6151 at 57.307 kb on - strand, within GFF6151 at 57.307 kb on - strand, within GFF6151 at 57.307 kb on - strand, within GFF6151 at 57.307 kb on - strand, within GFF6151 at 57.539 kb on + strand, within GFF6152 at 57.539 kb on + strand, within GFF6152 at 57.539 kb on + strand, within GFF6152 at 57.539 kb on + strand, within GFF6152 at 57.539 kb on + strand, within GFF6152 at 57.539 kb on + strand, within GFF6152 at 57.539 kb on + strand, within GFF6152 at 57.539 kb on + strand, within GFF6152 at 57.540 kb on - strand, within GFF6152 at 57.540 kb on - strand, within GFF6152 at 57.617 kb on + strand, within GFF6152 at 57.618 kb on - strand, within GFF6152 at 57.618 kb on - strand, within GFF6152 at 57.618 kb on - strand, within GFF6152 at 57.618 kb on - strand, within GFF6152 at 57.878 kb on + strand at 57.878 kb on + strand at 57.879 kb on - strand at 57.879 kb on - strand at 57.879 kb on - strand at 57.928 kb on - strand at 58.269 kb on + strand, within GFF6153 at 58.269 kb on + strand, within GFF6153 at 58.269 kb on + strand, within GFF6153 at 58.269 kb on + strand, within GFF6153 at 58.269 kb on + strand, within GFF6153 at 58.270 kb on - strand, within GFF6153 at 58.270 kb on - strand, within GFF6153 at 58.509 kb on + strand, within GFF6153 at 58.509 kb on + strand, within GFF6153 at 58.509 kb on + strand, within GFF6153 at 58.510 kb on - strand, within GFF6153 at 58.510 kb on - strand, within GFF6153 at 58.510 kb on - strand, within GFF6153 at 58.510 kb on - strand, within GFF6153 at 58.648 kb on - strand, within GFF6153 at 58.648 kb on - strand, within GFF6153 at 59.134 kb on + strand at 59.135 kb on - strand at 59.139 kb on + strand at 59.140 kb on - strand at 59.140 kb on - strand at 59.781 kb on + strand at 59.781 kb on + strand at 59.808 kb on + strand at 59.808 kb on + strand at 59.808 kb on + strand at 59.809 kb on - strand at 59.809 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 56,997 + GFF6151 0.58 -3.2 56,997 + GFF6151 0.58 -3.0 56,997 + GFF6151 0.58 -2.2 56,997 + GFF6151 0.58 -1.7 56,997 + GFF6151 0.58 -1.1 56,997 + GFF6151 0.58 -2.7 56,998 - GFF6151 0.58 -0.7 56,998 - GFF6151 0.58 -2.6 56,998 - GFF6151 0.58 -4.3 57,031 - GFF6151 0.61 -0.4 57,121 - GFF6151 0.71 -0.3 57,306 + GFF6151 0.90 -2.4 57,306 + GFF6151 0.90 -2.6 57,306 + GFF6151 0.90 -1.7 57,306 + GFF6151 0.90 -1.8 57,306 + GFF6151 0.90 +0.9 57,307 - GFF6151 0.90 -2.2 57,307 - GFF6151 0.90 -2.4 57,307 - GFF6151 0.90 -3.7 57,307 - GFF6151 0.90 -2.1 57,307 - GFF6151 0.90 +0.3 57,539 + GFF6152 0.11 +1.9 57,539 + GFF6152 0.11 +0.1 57,539 + GFF6152 0.11 -0.6 57,539 + GFF6152 0.11 -0.1 57,539 + GFF6152 0.11 +0.7 57,539 + GFF6152 0.11 -1.4 57,539 + GFF6152 0.11 +0.1 57,539 + GFF6152 0.11 -1.9 57,540 - GFF6152 0.11 +0.1 57,540 - GFF6152 0.11 -1.3 57,617 + GFF6152 0.32 +0.3 57,618 - GFF6152 0.32 +0.5 57,618 - GFF6152 0.32 +1.4 57,618 - GFF6152 0.32 +0.9 57,618 - GFF6152 0.32 -0.4 57,878 + -1.7 57,878 + -2.1 57,879 - +0.6 57,879 - -0.2 57,879 - -0.6 57,928 - +1.4 58,269 + GFF6153 0.34 -0.9 58,269 + GFF6153 0.34 -0.3 58,269 + GFF6153 0.34 -0.7 58,269 + GFF6153 0.34 -1.3 58,269 + GFF6153 0.34 +2.4 58,270 - GFF6153 0.34 -0.8 58,270 - GFF6153 0.34 -1.9 58,509 + GFF6153 0.55 +0.4 58,509 + GFF6153 0.55 -1.4 58,509 + GFF6153 0.55 -2.1 58,510 - GFF6153 0.55 -2.0 58,510 - GFF6153 0.55 -1.5 58,510 - GFF6153 0.55 +1.5 58,510 - GFF6153 0.55 -1.6 58,648 - GFF6153 0.67 -0.7 58,648 - GFF6153 0.67 -0.6 59,134 + +1.0 59,135 - +1.1 59,139 + -1.3 59,140 - +0.1 59,140 - +2.2 59,781 + -2.1 59,781 + +0.6 59,808 + +0.8 59,808 + +0.9 59,808 + +0.1 59,809 - +1.6 59,809 - +1.9
Or see this region's nucleotide sequence