Strain Fitness in Variovorax sp. SCN45 around GFF610

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF609 and GFF610 are separated by 24 nucleotidesGFF610 and GFF611 are separated by 68 nucleotides GFF609 - hypothetical protein, at 656,194 to 658,056 GFF609 GFF610 - hypothetical protein, at 658,081 to 659,037 GFF610 GFF611 - hypothetical protein, at 659,106 to 660,053 GFF611 Position (kb) 658 659 660Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 657.151 kb on + strand, within GFF609at 657.152 kb on - strand, within GFF609at 657.224 kb on - strand, within GFF609at 657.224 kb on - strand, within GFF609at 657.391 kb on + strand, within GFF609at 657.392 kb on - strand, within GFF609at 657.475 kb on + strand, within GFF609at 657.475 kb on + strand, within GFF609at 657.475 kb on + strand, within GFF609at 657.476 kb on - strand, within GFF609at 657.477 kb on + strand, within GFF609at 657.477 kb on + strand, within GFF609at 657.663 kb on + strand, within GFF609at 657.664 kb on - strand, within GFF609at 657.664 kb on - strand, within GFF609at 657.664 kb on - strand, within GFF609at 657.664 kb on - strand, within GFF609at 657.667 kb on + strand, within GFF609at 657.668 kb on - strand, within GFF609at 657.676 kb on + strand, within GFF609at 657.676 kb on + strand, within GFF609at 657.682 kb on - strand, within GFF609at 657.840 kb on - strand, within GFF609at 657.854 kb on + strand, within GFF609at 657.854 kb on + strand, within GFF609at 657.855 kb on - strand, within GFF609at 657.855 kb on - strand, within GFF609at 657.864 kb on + strand, within GFF609at 657.864 kb on + strand, within GFF609at 657.864 kb on + strand, within GFF609at 657.865 kb on - strand, within GFF609at 657.865 kb on - strand, within GFF609at 657.865 kb on - strand, within GFF609at 657.865 kb on - strand, within GFF609at 657.865 kb on - strand, within GFF609at 657.865 kb on - strand, within GFF609at 657.865 kb on - strand, within GFF609at 657.946 kb on + strandat 658.226 kb on + strand, within GFF610at 658.227 kb on - strand, within GFF610at 658.283 kb on - strand, within GFF610at 658.283 kb on - strand, within GFF610at 658.319 kb on + strand, within GFF610at 658.319 kb on + strand, within GFF610at 658.319 kb on + strand, within GFF610at 658.319 kb on + strand, within GFF610at 658.319 kb on + strand, within GFF610at 658.319 kb on + strand, within GFF610at 658.320 kb on - strand, within GFF610at 658.320 kb on - strand, within GFF610at 658.375 kb on + strand, within GFF610at 658.376 kb on - strand, within GFF610at 658.378 kb on + strand, within GFF610at 658.378 kb on + strand, within GFF610at 658.378 kb on + strand, within GFF610at 658.379 kb on - strand, within GFF610at 658.404 kb on - strand, within GFF610at 658.429 kb on + strand, within GFF610at 658.430 kb on - strand, within GFF610at 658.430 kb on - strand, within GFF610at 658.617 kb on - strand, within GFF610at 658.617 kb on - strand, within GFF610at 658.720 kb on + strand, within GFF610at 658.720 kb on + strand, within GFF610at 658.872 kb on - strand, within GFF610at 658.872 kb on - strand, within GFF610at 659.251 kb on + strand, within GFF611at 659.252 kb on - strand, within GFF611at 659.252 kb on - strand, within GFF611at 659.252 kb on - strand, within GFF611at 659.362 kb on + strand, within GFF611at 659.362 kb on + strand, within GFF611at 659.362 kb on + strand, within GFF611at 659.363 kb on - strand, within GFF611at 659.363 kb on - strand, within GFF611at 659.363 kb on - strand, within GFF611at 659.552 kb on + strand, within GFF611at 659.552 kb on + strand, within GFF611at 659.553 kb on - strand, within GFF611at 659.553 kb on - strand, within GFF611at 659.557 kb on - strand, within GFF611

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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657,151 + GFF609 0.51 -0.3
657,152 - GFF609 0.51 -1.9
657,224 - GFF609 0.55 -0.2
657,224 - GFF609 0.55 -1.0
657,391 + GFF609 0.64 +0.0
657,392 - GFF609 0.64 +0.2
657,475 + GFF609 0.69 -0.2
657,475 + GFF609 0.69 -2.9
657,475 + GFF609 0.69 -1.2
657,476 - GFF609 0.69 +1.3
657,477 + GFF609 0.69 +0.2
657,477 + GFF609 0.69 +0.3
657,663 + GFF609 0.79 -2.8
657,664 - GFF609 0.79 -1.8
657,664 - GFF609 0.79 +0.7
657,664 - GFF609 0.79 -1.4
657,664 - GFF609 0.79 +0.6
657,667 + GFF609 0.79 -0.2
657,668 - GFF609 0.79 -0.0
657,676 + GFF609 0.80 -0.1
657,676 + GFF609 0.80 -0.2
657,682 - GFF609 0.80 +1.1
657,840 - GFF609 0.88 -1.7
657,854 + GFF609 0.89 -0.7
657,854 + GFF609 0.89 -1.5
657,855 - GFF609 0.89 +0.5
657,855 - GFF609 0.89 -1.6
657,864 + GFF609 0.90 -2.2
657,864 + GFF609 0.90 +0.6
657,864 + GFF609 0.90 -1.7
657,865 - GFF609 0.90 +1.6
657,865 - GFF609 0.90 -1.6
657,865 - GFF609 0.90 -1.4
657,865 - GFF609 0.90 -0.0
657,865 - GFF609 0.90 -1.9
657,865 - GFF609 0.90 -1.1
657,865 - GFF609 0.90 +1.1
657,946 + -3.8
658,226 + GFF610 0.15 -1.0
658,227 - GFF610 0.15 -0.7
658,283 - GFF610 0.21 -1.2
658,283 - GFF610 0.21 -2.1
658,319 + GFF610 0.25 +0.7
658,319 + GFF610 0.25 -2.1
658,319 + GFF610 0.25 +0.4
658,319 + GFF610 0.25 +1.6
658,319 + GFF610 0.25 -1.6
658,319 + GFF610 0.25 +0.8
658,320 - GFF610 0.25 -1.9
658,320 - GFF610 0.25 -2.3
658,375 + GFF610 0.31 +1.6
658,376 - GFF610 0.31 -2.9
658,378 + GFF610 0.31 -1.7
658,378 + GFF610 0.31 -0.1
658,378 + GFF610 0.31 -0.2
658,379 - GFF610 0.31 +1.2
658,404 - GFF610 0.34 -0.3
658,429 + GFF610 0.36 -3.5
658,430 - GFF610 0.36 -0.4
658,430 - GFF610 0.36 -0.7
658,617 - GFF610 0.56 -1.3
658,617 - GFF610 0.56 -2.1
658,720 + GFF610 0.67 -1.0
658,720 + GFF610 0.67 +0.1
658,872 - GFF610 0.83 -0.7
658,872 - GFF610 0.83 +0.4
659,251 + GFF611 0.15 -1.9
659,252 - GFF611 0.15 -0.6
659,252 - GFF611 0.15 -0.8
659,252 - GFF611 0.15 +1.8
659,362 + GFF611 0.27 +1.3
659,362 + GFF611 0.27 +1.4
659,362 + GFF611 0.27 +2.0
659,363 - GFF611 0.27 -3.3
659,363 - GFF611 0.27 -1.7
659,363 - GFF611 0.27 -2.2
659,552 + GFF611 0.47 +2.3
659,552 + GFF611 0.47 -0.7
659,553 - GFF611 0.47 -1.9
659,553 - GFF611 0.47 +0.2
659,557 - GFF611 0.48 +0.4

Or see this region's nucleotide sequence