Strain Fitness in Variovorax sp. SCN45 around GFF6086

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6084 and GFF6085 overlap by 4 nucleotidesGFF6085 and GFF6086 are separated by 81 nucleotidesGFF6086 and GFF6087 overlap by 19 nucleotidesGFF6087 and GFF6088 are separated by 68 nucleotides GFF6084 - Aerotolerance protein BatA, at 146,106 to 147,143 GFF6084 GFF6085 - Transcriptional regulator, AcrR family, at 147,140 to 147,727 GFF6085 GFF6086 - Putative short-chain dehydrogenase, at 147,809 to 148,660 GFF6086 GFF6087 - Transcriptional regulator, AcrR family, at 148,642 to 149,316 GFF6087 GFF6088 - Phenylacetic acid degradation protein PaaY, at 149,385 to 149,987 GFF6088 Position (kb) 147 148 149Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 146.853 kb on + strand, within GFF6084at 146.853 kb on + strand, within GFF6084at 146.853 kb on + strand, within GFF6084at 146.854 kb on - strand, within GFF6084at 146.854 kb on - strand, within GFF6084at 146.854 kb on - strand, within GFF6084at 146.970 kb on + strand, within GFF6084at 146.971 kb on - strand, within GFF6084at 146.971 kb on - strand, within GFF6084at 146.971 kb on - strand, within GFF6084at 146.976 kb on + strand, within GFF6084at 146.976 kb on + strand, within GFF6084at 146.976 kb on + strand, within GFF6084at 146.977 kb on - strand, within GFF6084at 146.977 kb on - strand, within GFF6084at 147.009 kb on + strand, within GFF6084at 147.141 kb on + strandat 147.250 kb on - strand, within GFF6085at 147.250 kb on - strand, within GFF6085at 147.269 kb on + strand, within GFF6085at 147.270 kb on - strand, within GFF6085at 147.270 kb on - strand, within GFF6085at 147.357 kb on + strand, within GFF6085at 147.358 kb on - strand, within GFF6085at 147.358 kb on - strand, within GFF6085at 147.462 kb on + strand, within GFF6085at 147.462 kb on + strand, within GFF6085at 147.462 kb on + strand, within GFF6085at 147.462 kb on + strand, within GFF6085at 147.462 kb on + strand, within GFF6085at 147.462 kb on + strand, within GFF6085at 147.463 kb on - strand, within GFF6085at 147.463 kb on - strand, within GFF6085at 147.463 kb on - strand, within GFF6085at 147.463 kb on - strand, within GFF6085at 147.463 kb on - strand, within GFF6085at 147.463 kb on - strand, within GFF6085at 147.474 kb on + strand, within GFF6085at 147.475 kb on - strand, within GFF6085at 147.475 kb on - strand, within GFF6085at 147.475 kb on - strand, within GFF6085at 147.475 kb on - strand, within GFF6085at 147.475 kb on - strand, within GFF6085at 147.475 kb on - strand, within GFF6085at 147.475 kb on - strand, within GFF6085at 147.588 kb on + strand, within GFF6085at 147.588 kb on + strand, within GFF6085at 147.588 kb on + strand, within GFF6085at 147.588 kb on + strand, within GFF6085at 147.589 kb on - strand, within GFF6085at 147.589 kb on - strand, within GFF6085at 147.589 kb on - strand, within GFF6085at 147.589 kb on - strand, within GFF6085at 147.750 kb on + strandat 147.750 kb on + strandat 147.750 kb on + strandat 147.838 kb on + strandat 147.839 kb on - strandat 147.839 kb on - strandat 147.839 kb on - strandat 147.839 kb on - strandat 147.923 kb on + strand, within GFF6086at 147.923 kb on + strand, within GFF6086at 147.924 kb on - strand, within GFF6086at 147.924 kb on - strand, within GFF6086at 147.924 kb on - strand, within GFF6086at 147.924 kb on - strand, within GFF6086at 148.020 kb on - strand, within GFF6086at 148.322 kb on + strand, within GFF6086at 148.322 kb on + strand, within GFF6086at 148.322 kb on + strand, within GFF6086at 148.322 kb on + strand, within GFF6086at 148.323 kb on - strand, within GFF6086at 148.323 kb on - strand, within GFF6086at 148.323 kb on - strand, within GFF6086at 148.323 kb on - strand, within GFF6086at 148.643 kb on + strandat 148.643 kb on + strandat 148.644 kb on - strandat 148.705 kb on + strandat 148.706 kb on - strandat 148.715 kb on + strand, within GFF6087at 148.716 kb on - strand, within GFF6087at 149.021 kb on + strand, within GFF6087at 149.021 kb on + strand, within GFF6087at 149.021 kb on + strand, within GFF6087at 149.022 kb on - strand, within GFF6087at 149.022 kb on - strand, within GFF6087at 149.039 kb on + strand, within GFF6087at 149.040 kb on - strand, within GFF6087at 149.040 kb on - strand, within GFF6087at 149.162 kb on + strand, within GFF6087at 149.162 kb on + strand, within GFF6087at 149.162 kb on + strand, within GFF6087at 149.162 kb on + strand, within GFF6087at 149.162 kb on + strand, within GFF6087at 149.163 kb on - strand, within GFF6087at 149.163 kb on - strand, within GFF6087at 149.163 kb on - strand, within GFF6087at 149.163 kb on - strand, within GFF6087at 149.163 kb on - strand, within GFF6087at 149.163 kb on - strand, within GFF6087at 149.165 kb on + strand, within GFF6087at 149.165 kb on + strand, within GFF6087at 149.166 kb on - strand, within GFF6087at 149.166 kb on - strand, within GFF6087at 149.166 kb on - strand, within GFF6087at 149.166 kb on - strand, within GFF6087at 149.171 kb on + strand, within GFF6087at 149.171 kb on + strand, within GFF6087at 149.171 kb on + strand, within GFF6087at 149.172 kb on - strand, within GFF6087at 149.172 kb on - strand, within GFF6087at 149.291 kb on + strandat 149.292 kb on - strandat 149.292 kb on - strandat 149.337 kb on + strandat 149.337 kb on + strandat 149.337 kb on + strandat 149.337 kb on + strandat 149.337 kb on + strandat 149.337 kb on + strandat 149.337 kb on + strandat 149.338 kb on - strandat 149.338 kb on - strandat 149.338 kb on - strandat 149.338 kb on - strandat 149.338 kb on - strandat 149.512 kb on + strand, within GFF6088at 149.512 kb on + strand, within GFF6088at 149.513 kb on - strand, within GFF6088at 149.513 kb on - strand, within GFF6088

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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146,853 + GFF6084 0.72 -2.2
146,853 + GFF6084 0.72 -2.1
146,853 + GFF6084 0.72 -0.0
146,854 - GFF6084 0.72 -1.2
146,854 - GFF6084 0.72 -0.8
146,854 - GFF6084 0.72 +0.8
146,970 + GFF6084 0.83 +0.3
146,971 - GFF6084 0.83 -0.3
146,971 - GFF6084 0.83 -0.4
146,971 - GFF6084 0.83 -1.0
146,976 + GFF6084 0.84 +0.1
146,976 + GFF6084 0.84 +1.2
146,976 + GFF6084 0.84 -1.3
146,977 - GFF6084 0.84 +0.4
146,977 - GFF6084 0.84 -1.1
147,009 + GFF6084 0.87 -0.4
147,141 + -1.5
147,250 - GFF6085 0.19 -2.8
147,250 - GFF6085 0.19 +1.0
147,269 + GFF6085 0.22 -0.1
147,270 - GFF6085 0.22 -1.0
147,270 - GFF6085 0.22 +0.9
147,357 + GFF6085 0.37 -2.1
147,358 - GFF6085 0.37 -0.0
147,358 - GFF6085 0.37 +0.6
147,462 + GFF6085 0.55 -2.7
147,462 + GFF6085 0.55 +1.0
147,462 + GFF6085 0.55 -0.8
147,462 + GFF6085 0.55 -1.0
147,462 + GFF6085 0.55 -0.1
147,462 + GFF6085 0.55 -1.7
147,463 - GFF6085 0.55 -0.0
147,463 - GFF6085 0.55 +0.4
147,463 - GFF6085 0.55 -0.0
147,463 - GFF6085 0.55 -0.6
147,463 - GFF6085 0.55 +0.7
147,463 - GFF6085 0.55 -0.3
147,474 + GFF6085 0.57 -0.6
147,475 - GFF6085 0.57 -0.6
147,475 - GFF6085 0.57 -0.5
147,475 - GFF6085 0.57 -0.8
147,475 - GFF6085 0.57 -0.8
147,475 - GFF6085 0.57 -3.3
147,475 - GFF6085 0.57 -0.3
147,475 - GFF6085 0.57 +0.0
147,588 + GFF6085 0.76 -0.3
147,588 + GFF6085 0.76 -2.1
147,588 + GFF6085 0.76 +0.9
147,588 + GFF6085 0.76 -2.6
147,589 - GFF6085 0.76 -2.3
147,589 - GFF6085 0.76 -1.8
147,589 - GFF6085 0.76 -1.7
147,589 - GFF6085 0.76 -1.4
147,750 + -0.1
147,750 + -1.0
147,750 + +2.0
147,838 + +2.4
147,839 - -0.2
147,839 - -1.7
147,839 - -0.3
147,839 - -1.1
147,923 + GFF6086 0.13 -1.0
147,923 + GFF6086 0.13 +0.5
147,924 - GFF6086 0.13 +1.6
147,924 - GFF6086 0.13 +0.4
147,924 - GFF6086 0.13 +0.4
147,924 - GFF6086 0.13 +1.7
148,020 - GFF6086 0.25 +0.8
148,322 + GFF6086 0.60 -3.1
148,322 + GFF6086 0.60 +0.3
148,322 + GFF6086 0.60 +0.4
148,322 + GFF6086 0.60 +0.4
148,323 - GFF6086 0.60 -0.8
148,323 - GFF6086 0.60 -2.5
148,323 - GFF6086 0.60 -1.0
148,323 - GFF6086 0.60 -1.1
148,643 + -1.5
148,643 + +2.4
148,644 - -0.5
148,705 + -2.3
148,706 - -1.3
148,715 + GFF6087 0.11 +1.7
148,716 - GFF6087 0.11 +0.6
149,021 + GFF6087 0.56 -1.6
149,021 + GFF6087 0.56 -0.3
149,021 + GFF6087 0.56 -1.8
149,022 - GFF6087 0.56 -3.4
149,022 - GFF6087 0.56 -0.9
149,039 + GFF6087 0.59 -1.3
149,040 - GFF6087 0.59 -1.0
149,040 - GFF6087 0.59 -0.4
149,162 + GFF6087 0.77 -3.6
149,162 + GFF6087 0.77 -1.2
149,162 + GFF6087 0.77 -0.6
149,162 + GFF6087 0.77 -0.0
149,162 + GFF6087 0.77 +0.4
149,163 - GFF6087 0.77 -4.8
149,163 - GFF6087 0.77 -0.7
149,163 - GFF6087 0.77 -1.7
149,163 - GFF6087 0.77 -2.7
149,163 - GFF6087 0.77 -0.8
149,163 - GFF6087 0.77 -2.8
149,165 + GFF6087 0.77 -1.6
149,165 + GFF6087 0.77 -1.7
149,166 - GFF6087 0.78 -1.8
149,166 - GFF6087 0.78 -3.2
149,166 - GFF6087 0.78 -1.5
149,166 - GFF6087 0.78 -1.3
149,171 + GFF6087 0.78 -1.6
149,171 + GFF6087 0.78 -0.2
149,171 + GFF6087 0.78 -1.2
149,172 - GFF6087 0.79 -2.7
149,172 - GFF6087 0.79 -1.5
149,291 + -2.0
149,292 - -1.0
149,292 - -2.7
149,337 + -0.6
149,337 + -0.0
149,337 + -1.7
149,337 + -0.6
149,337 + -1.6
149,337 + -2.3
149,337 + +2.5
149,338 - -2.7
149,338 - -2.9
149,338 - -1.2
149,338 - -1.0
149,338 - +1.5
149,512 + GFF6088 0.21 -0.3
149,512 + GFF6088 0.21 -0.7
149,513 - GFF6088 0.21 -1.0
149,513 - GFF6088 0.21 -1.2

Or see this region's nucleotide sequence