Strain Fitness in Variovorax sp. SCN45 around GFF6056

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6054 and GFF6055 overlap by 1 nucleotidesGFF6055 and GFF6056 are separated by 148 nucleotidesGFF6056 and GFF6057 are separated by 43 nucleotides GFF6054 - Isoleucyl-tRNA synthetase (EC 6.1.1.5), at 114,303 to 117,152 GFF6054 GFF6055 - Lipoprotein signal peptidase (EC 3.4.23.36), at 117,152 to 117,664 GFF6055 GFF6056 - Transcriptional regulator, LacI family, at 117,813 to 118,832 GFF6056 GFF6057 - ABC-type Fe3+ transport system, periplasmic component, at 118,876 to 119,886 GFF6057 Position (kb) 117 118 119Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 117.662 kb on + strandat 117.662 kb on + strandat 117.662 kb on + strandat 117.663 kb on - strandat 117.663 kb on - strandat 117.759 kb on + strandat 117.760 kb on - strandat 117.770 kb on + strandat 117.942 kb on + strand, within GFF6056at 117.942 kb on + strand, within GFF6056at 117.942 kb on + strand, within GFF6056at 117.942 kb on + strand, within GFF6056at 117.943 kb on - strand, within GFF6056at 117.943 kb on - strand, within GFF6056at 117.943 kb on - strand, within GFF6056at 117.943 kb on - strand, within GFF6056at 117.943 kb on - strand, within GFF6056at 117.943 kb on - strand, within GFF6056at 117.943 kb on - strand, within GFF6056at 118.105 kb on - strand, within GFF6056at 118.233 kb on + strand, within GFF6056at 118.233 kb on + strand, within GFF6056at 118.233 kb on + strand, within GFF6056at 118.233 kb on + strand, within GFF6056at 118.233 kb on + strand, within GFF6056at 118.234 kb on - strand, within GFF6056at 118.234 kb on - strand, within GFF6056at 118.234 kb on - strand, within GFF6056at 118.234 kb on - strand, within GFF6056at 118.234 kb on - strand, within GFF6056at 118.245 kb on + strand, within GFF6056at 118.245 kb on + strand, within GFF6056at 118.245 kb on + strand, within GFF6056at 118.245 kb on + strand, within GFF6056at 118.245 kb on + strand, within GFF6056at 118.246 kb on - strand, within GFF6056at 118.246 kb on - strand, within GFF6056at 118.246 kb on - strand, within GFF6056at 118.246 kb on - strand, within GFF6056at 118.827 kb on + strandat 118.827 kb on + strandat 118.828 kb on - strandat 118.828 kb on - strandat 118.828 kb on - strandat 118.828 kb on - strandat 118.828 kb on - strandat 118.967 kb on - strandat 119.119 kb on + strand, within GFF6057at 119.119 kb on + strand, within GFF6057at 119.120 kb on - strand, within GFF6057at 119.120 kb on - strand, within GFF6057at 119.120 kb on - strand, within GFF6057at 119.173 kb on + strand, within GFF6057at 119.173 kb on + strand, within GFF6057at 119.174 kb on - strand, within GFF6057at 119.174 kb on - strand, within GFF6057at 119.332 kb on + strand, within GFF6057at 119.332 kb on + strand, within GFF6057at 119.332 kb on + strand, within GFF6057at 119.333 kb on - strand, within GFF6057at 119.333 kb on - strand, within GFF6057at 119.333 kb on - strand, within GFF6057at 119.381 kb on - strand, within GFF6057at 119.449 kb on + strand, within GFF6057at 119.449 kb on + strand, within GFF6057at 119.500 kb on + strand, within GFF6057at 119.500 kb on + strand, within GFF6057at 119.500 kb on + strand, within GFF6057at 119.501 kb on - strand, within GFF6057at 119.501 kb on - strand, within GFF6057at 119.569 kb on + strand, within GFF6057at 119.569 kb on + strand, within GFF6057at 119.569 kb on + strand, within GFF6057at 119.569 kb on + strand, within GFF6057at 119.570 kb on - strand, within GFF6057at 119.629 kb on + strand, within GFF6057at 119.629 kb on + strand, within GFF6057at 119.630 kb on - strand, within GFF6057at 119.731 kb on + strand, within GFF6057at 119.731 kb on + strand, within GFF6057at 119.732 kb on - strand, within GFF6057at 119.732 kb on - strand, within GFF6057at 119.824 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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117,662 + -0.3
117,662 + -2.1
117,662 + -0.5
117,663 - +2.2
117,663 - +0.4
117,759 + -0.0
117,760 - -1.0
117,770 + -2.0
117,942 + GFF6056 0.13 +0.1
117,942 + GFF6056 0.13 -1.2
117,942 + GFF6056 0.13 -0.8
117,942 + GFF6056 0.13 -2.4
117,943 - GFF6056 0.13 +0.7
117,943 - GFF6056 0.13 -0.6
117,943 - GFF6056 0.13 +0.4
117,943 - GFF6056 0.13 -0.6
117,943 - GFF6056 0.13 -1.0
117,943 - GFF6056 0.13 -1.6
117,943 - GFF6056 0.13 +3.3
118,105 - GFF6056 0.29 -3.0
118,233 + GFF6056 0.41 -1.8
118,233 + GFF6056 0.41 -1.6
118,233 + GFF6056 0.41 +0.0
118,233 + GFF6056 0.41 +1.5
118,233 + GFF6056 0.41 +1.2
118,234 - GFF6056 0.41 -2.1
118,234 - GFF6056 0.41 -1.5
118,234 - GFF6056 0.41 +0.4
118,234 - GFF6056 0.41 -1.6
118,234 - GFF6056 0.41 -1.5
118,245 + GFF6056 0.42 -1.9
118,245 + GFF6056 0.42 -1.6
118,245 + GFF6056 0.42 +0.4
118,245 + GFF6056 0.42 +1.0
118,245 + GFF6056 0.42 -2.7
118,246 - GFF6056 0.42 -3.4
118,246 - GFF6056 0.42 -1.4
118,246 - GFF6056 0.42 -3.1
118,246 - GFF6056 0.42 +0.6
118,827 + -0.1
118,827 + -1.7
118,828 - +0.4
118,828 - -1.4
118,828 - +1.0
118,828 - -1.3
118,828 - +0.3
118,967 - -0.3
119,119 + GFF6057 0.24 -1.8
119,119 + GFF6057 0.24 +0.9
119,120 - GFF6057 0.24 +0.9
119,120 - GFF6057 0.24 -0.8
119,120 - GFF6057 0.24 -2.9
119,173 + GFF6057 0.29 +0.8
119,173 + GFF6057 0.29 +0.6
119,174 - GFF6057 0.29 +0.6
119,174 - GFF6057 0.29 -0.3
119,332 + GFF6057 0.45 -0.7
119,332 + GFF6057 0.45 +0.2
119,332 + GFF6057 0.45 -1.6
119,333 - GFF6057 0.45 -0.3
119,333 - GFF6057 0.45 -0.9
119,333 - GFF6057 0.45 -0.8
119,381 - GFF6057 0.50 +1.5
119,449 + GFF6057 0.57 +0.3
119,449 + GFF6057 0.57 -0.4
119,500 + GFF6057 0.62 -0.1
119,500 + GFF6057 0.62 -1.0
119,500 + GFF6057 0.62 +0.5
119,501 - GFF6057 0.62 -2.9
119,501 - GFF6057 0.62 -0.6
119,569 + GFF6057 0.69 -1.0
119,569 + GFF6057 0.69 +1.4
119,569 + GFF6057 0.69 +1.0
119,569 + GFF6057 0.69 +0.7
119,570 - GFF6057 0.69 +1.3
119,629 + GFF6057 0.74 -0.8
119,629 + GFF6057 0.74 -1.5
119,630 - GFF6057 0.75 -0.3
119,731 + GFF6057 0.85 -1.1
119,731 + GFF6057 0.85 -1.1
119,732 - GFF6057 0.85 +2.0
119,732 - GFF6057 0.85 +1.1
119,824 + +0.3

Or see this region's nucleotide sequence