Strain Fitness in Variovorax sp. SCN45 around GFF6030

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
89,665	-				-1.1
89,665	-				-0.6
89,665	-				-1.6
89,668	+				+0.6
89,668	+				-0.6
89,669	-				+1.0
89,669	-				-1.6
89,669	-				-0.2
89,669	-				-2.1
89,794	+		GFF6029	0.11	-0.5
89,992	+		GFF6029	0.31	+0.9
89,992	+		GFF6029	0.31	+1.9
89,992	+		GFF6029	0.31	-1.0
89,992	+		GFF6029	0.31	-1.3
89,993	-		GFF6029	0.32	+0.1
89,993	-		GFF6029	0.32	-1.3
90,128	-		GFF6029	0.45	-0.8
90,157	+		GFF6029	0.48	+0.0
90,158	-		GFF6029	0.48	+0.8
90,158	-		GFF6029	0.48	-2.0
90,158	-		GFF6029	0.48	-0.4
90,244	+		GFF6029	0.57	-0.4
90,244	+		GFF6029	0.57	+0.0
90,245	-		GFF6029	0.57	-0.3
90,245	-		GFF6029	0.57	-0.3
90,269	+		GFF6029	0.60	-0.6
90,269	+		GFF6029	0.60	+0.3
90,269	+		GFF6029	0.60	-0.9
90,269	+		GFF6029	0.60	-0.3
90,270	-		GFF6029	0.60	-0.7
90,270	-		GFF6029	0.60	+1.0
90,622	+				-0.1
90,622	+				-0.9
90,622	+				-1.6
90,622	+				-0.3
90,677	+				-1.0
90,755	+		GFF6030	0.12	+1.2
90,755	+		GFF6030	0.12	-3.1
90,756	-		GFF6030	0.12	-0.6
90,756	-		GFF6030	0.12	-1.5
90,756	-		GFF6030	0.12	-0.8
90,756	-		GFF6030	0.12	-2.1
91,064	+		GFF6030	0.51	-1.0
91,064	+		GFF6030	0.51	-0.6
91,064	+		GFF6030	0.51	-0.9
91,064	+		GFF6030	0.51	+0.9
91,065	-		GFF6030	0.52	-2.3
91,065	-		GFF6030	0.52	-0.3
91,065	-		GFF6030	0.52	-2.0
91,464	+				-2.3
91,465	-				+2.3
91,465	-				-0.6
91,465	-				-0.2
91,530	+		GFF6031	0.11	-1.9
91,530	+		GFF6031	0.11	-1.5
91,531	-		GFF6031	0.11	-2.2
91,531	-		GFF6031	0.11	-1.7
91,531	-		GFF6031	0.11	-0.0
91,531	-		GFF6031	0.11	-1.5
91,746	+		GFF6031	0.39	-0.2
91,767	+		GFF6031	0.42	-0.3
91,767	+		GFF6031	0.42	-0.6
91,794	+		GFF6031	0.45	-1.3
91,794	+		GFF6031	0.45	-0.4
91,794	+		GFF6031	0.45	+1.0
91,795	-		GFF6031	0.45	-3.2
91,795	-		GFF6031	0.45	-0.6
91,795	-		GFF6031	0.45	-1.6
92,007	+		GFF6031	0.72	-1.9
92,049	+		GFF6031	0.78	+0.6
92,049	+		GFF6031	0.78	-3.5
92,050	-		GFF6031	0.78	-2.8
92,050	-		GFF6031	0.78	+0.7
92,112	+		GFF6031	0.86	-1.6
92,113	-		GFF6031	0.86	-1.2
92,113	-		GFF6031	0.86	-1.1
92,299	-				-1.0