Strain Fitness in Variovorax sp. SCN45 around GFF6006

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
63,440	-		GFF6005	0.39	+0.0
63,440	-		GFF6005	0.39	+0.4
63,455	-		GFF6005	0.40	+1.0
63,532	+		GFF6005	0.45	-1.3
63,532	+		GFF6005	0.45	+2.7
63,533	-		GFF6005	0.46	+0.8
63,533	-		GFF6005	0.46	+0.7
63,533	-		GFF6005	0.46	-0.9
63,538	+		GFF6005	0.46	+1.0
63,539	-		GFF6005	0.46	+0.4
63,601	+		GFF6005	0.50	-1.3
63,601	+		GFF6005	0.50	-0.7
63,601	+		GFF6005	0.50	-0.6
63,601	+		GFF6005	0.50	-1.0
63,601	+		GFF6005	0.50	-2.4
63,601	+		GFF6005	0.50	+0.6
63,601	+		GFF6005	0.50	+0.5
63,601	+		GFF6005	0.50	-0.0
63,602	-		GFF6005	0.50	-1.9
63,602	-		GFF6005	0.50	+0.2
63,602	-		GFF6005	0.50	+1.3
63,602	-		GFF6005	0.50	-1.7
63,602	-		GFF6005	0.50	-2.9
63,602	-		GFF6005	0.50	-0.7
63,766	+		GFF6005	0.61	-1.0
63,766	+		GFF6005	0.61	+0.9
64,255	+				+1.0
64,255	+				-1.3
64,255	+				+0.1
64,255	+				-0.9
64,256	-				+3.2
64,357	+				-0.0
64,453	+				-0.6
64,454	-				-1.5
64,586	-		GFF6006	0.23	-0.8
64,859	-		GFF6006	0.51	-1.9
64,951	+		GFF6006	0.60	+1.0
64,951	+		GFF6006	0.60	+1.0
64,951	+		GFF6006	0.60	-0.6
64,952	-		GFF6006	0.60	+2.0
65,429	+				+1.2
65,430	-				-0.2
65,577	+				-1.0
65,577	+				-1.6
65,577	+				+2.4
65,578	-				-1.4
65,578	-				-3.4
65,661	+		GFF6007	0.12	-2.3
65,776	-		GFF6007	0.17	-1.2
65,776	-		GFF6007	0.17	-2.3
65,776	-		GFF6007	0.17	-0.4
65,932	+		GFF6007	0.24	-0.8