Strain Fitness in Variovorax sp. SCN45 around GFF5968

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5967 and GFF5968 are separated by 6 nucleotidesGFF5968 and GFF5969 are separated by 347 nucleotides GFF5967 - Beta-propeller domains of methanol dehydrogenase type, at 21,402 to 22,817 GFF5967 GFF5968 - no description, at 22,824 to 23,717 GFF5968 GFF5969 - Transcriptional regulator, GntR family, at 24,065 to 24,745 GFF5969 Position (kb) 22 23 24Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 22.296 kb on + strand, within GFF5967at 22.296 kb on + strand, within GFF5967at 22.297 kb on - strand, within GFF5967at 22.297 kb on - strand, within GFF5967at 22.308 kb on + strand, within GFF5967at 22.338 kb on + strand, within GFF5967at 22.338 kb on + strand, within GFF5967at 22.338 kb on + strand, within GFF5967at 22.338 kb on + strand, within GFF5967at 22.338 kb on + strand, within GFF5967at 22.339 kb on - strand, within GFF5967at 22.339 kb on - strand, within GFF5967at 22.339 kb on - strand, within GFF5967at 22.339 kb on - strand, within GFF5967at 22.339 kb on - strand, within GFF5967at 22.392 kb on + strand, within GFF5967at 22.392 kb on + strand, within GFF5967at 22.815 kb on + strandat 22.815 kb on + strandat 22.816 kb on - strandat 22.816 kb on - strandat 22.825 kb on + strandat 22.826 kb on - strandat 22.826 kb on - strandat 22.826 kb on - strandat 22.826 kb on - strandat 22.826 kb on - strandat 22.826 kb on - strandat 22.826 kb on - strandat 22.852 kb on + strandat 22.852 kb on + strandat 22.853 kb on - strandat 22.853 kb on - strandat 22.900 kb on + strandat 22.900 kb on + strandat 22.900 kb on + strandat 22.900 kb on + strandat 22.900 kb on + strandat 22.901 kb on - strandat 22.901 kb on - strandat 23.200 kb on + strand, within GFF5968at 23.200 kb on + strand, within GFF5968at 23.201 kb on - strand, within GFF5968at 23.201 kb on - strand, within GFF5968at 23.201 kb on - strand, within GFF5968at 23.407 kb on + strand, within GFF5968at 23.407 kb on + strand, within GFF5968at 23.410 kb on + strand, within GFF5968at 23.410 kb on + strand, within GFF5968at 23.410 kb on + strand, within GFF5968at 23.410 kb on + strand, within GFF5968at 23.410 kb on + strand, within GFF5968at 23.411 kb on - strand, within GFF5968at 23.411 kb on - strand, within GFF5968at 23.411 kb on - strand, within GFF5968at 23.411 kb on - strand, within GFF5968at 23.411 kb on - strand, within GFF5968at 23.411 kb on - strand, within GFF5968at 23.628 kb on + strandat 23.628 kb on + strandat 23.628 kb on + strandat 23.628 kb on + strandat 23.628 kb on + strandat 23.628 kb on + strandat 23.629 kb on - strandat 23.629 kb on - strandat 23.629 kb on - strandat 23.629 kb on - strandat 23.821 kb on + strandat 23.821 kb on + strandat 23.832 kb on + strandat 23.867 kb on - strandat 24.052 kb on + strandat 24.052 kb on + strandat 24.052 kb on + strandat 24.053 kb on - strandat 24.053 kb on - strandat 24.053 kb on - strandat 24.053 kb on - strandat 24.053 kb on - strandat 24.053 kb on - strandat 24.278 kb on + strand, within GFF5969at 24.278 kb on + strand, within GFF5969at 24.278 kb on + strand, within GFF5969at 24.278 kb on + strand, within GFF5969at 24.278 kb on + strand, within GFF5969at 24.278 kb on + strand, within GFF5969at 24.278 kb on + strand, within GFF5969at 24.278 kb on + strand, within GFF5969at 24.278 kb on + strand, within GFF5969at 24.278 kb on + strand, within GFF5969at 24.278 kb on + strand, within GFF5969at 24.278 kb on + strand, within GFF5969at 24.278 kb on + strand, within GFF5969at 24.279 kb on - strand, within GFF5969at 24.279 kb on - strand, within GFF5969at 24.279 kb on - strand, within GFF5969at 24.279 kb on - strand, within GFF5969at 24.279 kb on - strand, within GFF5969at 24.279 kb on - strand, within GFF5969at 24.279 kb on - strand, within GFF5969at 24.279 kb on - strand, within GFF5969at 24.279 kb on - strand, within GFF5969at 24.279 kb on - strand, within GFF5969at 24.279 kb on - strand, within GFF5969at 24.279 kb on - strand, within GFF5969at 24.279 kb on - strand, within GFF5969at 24.279 kb on - strand, within GFF5969at 24.279 kb on - strand, within GFF5969at 24.279 kb on - strand, within GFF5969at 24.279 kb on - strand, within GFF5969at 24.279 kb on - strand, within GFF5969at 24.279 kb on - strand, within GFF5969at 24.279 kb on - strand, within GFF5969at 24.510 kb on + strand, within GFF5969at 24.510 kb on + strand, within GFF5969at 24.510 kb on + strand, within GFF5969at 24.510 kb on + strand, within GFF5969at 24.525 kb on + strand, within GFF5969at 24.525 kb on + strand, within GFF5969at 24.526 kb on - strand, within GFF5969at 24.526 kb on - strand, within GFF5969at 24.526 kb on - strand, within GFF5969at 24.572 kb on + strand, within GFF5969at 24.572 kb on + strand, within GFF5969at 24.572 kb on + strand, within GFF5969at 24.573 kb on - strand, within GFF5969at 24.573 kb on - strand, within GFF5969at 24.573 kb on - strand, within GFF5969

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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22,296 + GFF5967 0.63 +3.1
22,296 + GFF5967 0.63 +0.1
22,297 - GFF5967 0.63 -2.6
22,297 - GFF5967 0.63 -3.0
22,308 + GFF5967 0.64 -2.4
22,338 + GFF5967 0.66 +1.0
22,338 + GFF5967 0.66 -0.6
22,338 + GFF5967 0.66 +0.4
22,338 + GFF5967 0.66 -1.0
22,338 + GFF5967 0.66 -2.3
22,339 - GFF5967 0.66 -0.4
22,339 - GFF5967 0.66 +1.9
22,339 - GFF5967 0.66 -3.1
22,339 - GFF5967 0.66 -1.3
22,339 - GFF5967 0.66 -0.6
22,392 + GFF5967 0.70 -0.8
22,392 + GFF5967 0.70 -1.9
22,815 + -0.6
22,815 + -1.0
22,816 - -0.5
22,816 - +0.7
22,825 + -2.4
22,826 - +0.2
22,826 - +0.1
22,826 - +2.4
22,826 - -1.5
22,826 - -0.1
22,826 - +3.0
22,826 - -0.6
22,852 + -2.9
22,852 + +0.9
22,853 - -2.2
22,853 - -1.8
22,900 + +1.8
22,900 + -0.0
22,900 + +1.1
22,900 + -2.0
22,900 + +0.9
22,901 - -0.3
22,901 - -0.8
23,200 + GFF5968 0.42 +0.0
23,200 + GFF5968 0.42 +0.4
23,201 - GFF5968 0.42 +1.1
23,201 - GFF5968 0.42 +0.0
23,201 - GFF5968 0.42 +3.7
23,407 + GFF5968 0.65 -1.6
23,407 + GFF5968 0.65 +1.4
23,410 + GFF5968 0.66 -1.6
23,410 + GFF5968 0.66 -0.3
23,410 + GFF5968 0.66 -1.0
23,410 + GFF5968 0.66 -0.0
23,410 + GFF5968 0.66 +0.8
23,411 - GFF5968 0.66 -1.6
23,411 - GFF5968 0.66 +0.6
23,411 - GFF5968 0.66 -1.8
23,411 - GFF5968 0.66 +1.6
23,411 - GFF5968 0.66 +0.9
23,411 - GFF5968 0.66 +1.1
23,628 + +0.6
23,628 + +2.0
23,628 + -1.2
23,628 + -0.3
23,628 + -2.3
23,628 + -0.0
23,629 - -0.6
23,629 - +1.9
23,629 - -2.3
23,629 - -2.1
23,821 + +0.4
23,821 + -2.9
23,832 + -0.0
23,867 - -2.1
24,052 + +1.2
24,052 + +2.4
24,052 + -2.9
24,053 - +1.1
24,053 - -0.6
24,053 - -0.8
24,053 - +0.7
24,053 - -0.8
24,053 - -1.3
24,278 + GFF5969 0.31 -2.8
24,278 + GFF5969 0.31 -1.6
24,278 + GFF5969 0.31 -1.4
24,278 + GFF5969 0.31 -0.1
24,278 + GFF5969 0.31 -1.3
24,278 + GFF5969 0.31 +1.0
24,278 + GFF5969 0.31 +0.2
24,278 + GFF5969 0.31 -2.9
24,278 + GFF5969 0.31 +3.3
24,278 + GFF5969 0.31 -2.0
24,278 + GFF5969 0.31 -1.0
24,278 + GFF5969 0.31 +1.3
24,278 + GFF5969 0.31 -0.3
24,279 - GFF5969 0.31 -0.0
24,279 - GFF5969 0.31 -1.6
24,279 - GFF5969 0.31 +0.5
24,279 - GFF5969 0.31 -3.2
24,279 - GFF5969 0.31 -1.5
24,279 - GFF5969 0.31 -0.3
24,279 - GFF5969 0.31 +0.4
24,279 - GFF5969 0.31 -1.3
24,279 - GFF5969 0.31 -0.5
24,279 - GFF5969 0.31 -1.3
24,279 - GFF5969 0.31 +1.2
24,279 - GFF5969 0.31 -0.4
24,279 - GFF5969 0.31 -2.3
24,279 - GFF5969 0.31 +0.4
24,279 - GFF5969 0.31 -3.0
24,279 - GFF5969 0.31 -0.2
24,279 - GFF5969 0.31 -0.2
24,279 - GFF5969 0.31 -0.6
24,279 - GFF5969 0.31 +1.0
24,279 - GFF5969 0.31 -0.3
24,510 + GFF5969 0.65 -1.3
24,510 + GFF5969 0.65 -2.1
24,510 + GFF5969 0.65 -0.2
24,510 + GFF5969 0.65 -2.0
24,525 + GFF5969 0.68 +0.4
24,525 + GFF5969 0.68 -0.3
24,526 - GFF5969 0.68 -3.6
24,526 - GFF5969 0.68 -2.3
24,526 - GFF5969 0.68 +2.6
24,572 + GFF5969 0.74 -1.7
24,572 + GFF5969 0.74 -1.2
24,572 + GFF5969 0.74 +0.6
24,573 - GFF5969 0.75 +1.9
24,573 - GFF5969 0.75 +0.7
24,573 - GFF5969 0.75 -0.2

Or see this region's nucleotide sequence