Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5957 and GFF5958 are separated by 7 nucleotides GFF5958 and GFF5959 are separated by 2 nucleotides GFF5959 and GFF5960 are separated by 56 nucleotides GFF5960 and GFF5961 overlap by 4 nucleotides
GFF5957 - Uncharacterized MFS-type transporter, at 12,644 to 13,969
GFF5957
GFF5958 - FIG00537018: hypothetical protein, at 13,977 to 14,696
GFF5958
GFF5959 - Putative amidase R03093, at 14,699 to 16,048
GFF5959
GFF5960 - Acetyltransferases, including N-acetylases of ribosomal proteins, at 16,105 to 16,719
GFF5960
GFF5961 - Acetyltransferase, at 16,716 to 17,210
GFF5961
Position (kb) 14
15
16
17 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 13.724 kb on + strand, within GFF5957 at 13.724 kb on + strand, within GFF5957 at 13.775 kb on + strand, within GFF5957 at 13.796 kb on + strand, within GFF5957 at 13.797 kb on - strand, within GFF5957 at 13.797 kb on - strand, within GFF5957 at 13.797 kb on - strand, within GFF5957 at 13.889 kb on + strand at 13.890 kb on - strand at 13.890 kb on - strand at 13.890 kb on - strand at 14.166 kb on + strand, within GFF5958 at 14.166 kb on + strand, within GFF5958 at 14.167 kb on - strand, within GFF5958 at 14.322 kb on + strand, within GFF5958 at 14.664 kb on + strand at 14.664 kb on + strand at 14.831 kb on + strand at 14.832 kb on - strand at 14.832 kb on - strand at 14.936 kb on + strand, within GFF5959 at 14.937 kb on - strand, within GFF5959 at 14.937 kb on - strand, within GFF5959 at 14.937 kb on - strand, within GFF5959 at 15.717 kb on - strand, within GFF5959 at 15.717 kb on - strand, within GFF5959 at 16.104 kb on + strand at 16.271 kb on - strand, within GFF5960 at 16.271 kb on - strand, within GFF5960 at 16.392 kb on + strand, within GFF5960 at 16.392 kb on + strand, within GFF5960 at 16.462 kb on + strand, within GFF5960 at 16.463 kb on - strand, within GFF5960 at 16.803 kb on + strand, within GFF5961 at 16.803 kb on + strand, within GFF5961 at 16.803 kb on + strand, within GFF5961 at 16.803 kb on + strand, within GFF5961 at 16.804 kb on - strand, within GFF5961 at 16.804 kb on - strand, within GFF5961 at 16.804 kb on - strand, within GFF5961 at 16.804 kb on - strand, within GFF5961
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 13,724 + GFF5957 0.81 +1.8 13,724 + GFF5957 0.81 +0.5 13,775 + GFF5957 0.85 +0.9 13,796 + GFF5957 0.87 -0.0 13,797 - GFF5957 0.87 +0.4 13,797 - GFF5957 0.87 -0.5 13,797 - GFF5957 0.87 +0.5 13,889 + -0.3 13,890 - +0.4 13,890 - +1.3 13,890 - +1.0 14,166 + GFF5958 0.26 +1.0 14,166 + GFF5958 0.26 +1.4 14,167 - GFF5958 0.26 +1.7 14,322 + GFF5958 0.48 +0.5 14,664 + -0.9 14,664 + -2.3 14,831 + -2.4 14,832 - -2.7 14,832 - +3.0 14,936 + GFF5959 0.18 +0.6 14,937 - GFF5959 0.18 -0.6 14,937 - GFF5959 0.18 -0.7 14,937 - GFF5959 0.18 -0.8 15,717 - GFF5959 0.75 +0.8 15,717 - GFF5959 0.75 -0.6 16,104 + +2.7 16,271 - GFF5960 0.27 -0.7 16,271 - GFF5960 0.27 -2.9 16,392 + GFF5960 0.47 -1.7 16,392 + GFF5960 0.47 +1.5 16,462 + GFF5960 0.58 -2.2 16,463 - GFF5960 0.58 -1.9 16,803 + GFF5961 0.18 -1.3 16,803 + GFF5961 0.18 -0.9 16,803 + GFF5961 0.18 -3.2 16,803 + GFF5961 0.18 -2.3 16,804 - GFF5961 0.18 +1.0 16,804 - GFF5961 0.18 -1.8 16,804 - GFF5961 0.18 -3.0 16,804 - GFF5961 0.18 -3.2
Or see this region's nucleotide sequence