Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5947 and GFF5948 are separated by 22 nucleotides GFF5948 and GFF5949 are separated by 3 nucleotides GFF5949 and GFF5950 overlap by 4 nucleotides
GFF5947 - Large extracellular alpha-helical protein, at 94 to 6,120
GFF5947
GFF5948 - hypothetical protein, at 6,143 to 6,790
GFF5948
GFF5949 - Glyoxalase family protein, at 6,794 to 7,207
GFF5949
GFF5950 - no description, at 7,204 to 7,797
GFF5950
Position (kb) 6
7 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5.189 kb on - strand, within GFF5947 at 5.189 kb on - strand, within GFF5947 at 5.695 kb on + strand at 5.747 kb on - strand at 5.747 kb on - strand at 5.747 kb on - strand at 5.956 kb on + strand at 5.957 kb on - strand at 5.957 kb on - strand at 5.959 kb on + strand at 5.959 kb on + strand at 5.960 kb on - strand at 5.960 kb on - strand at 5.965 kb on + strand at 5.966 kb on - strand at 5.966 kb on - strand at 5.995 kb on + strand at 5.995 kb on + strand at 5.995 kb on + strand at 5.995 kb on + strand at 5.995 kb on + strand at 5.996 kb on - strand at 5.996 kb on - strand at 6.058 kb on + strand at 6.059 kb on - strand at 6.059 kb on - strand at 6.118 kb on + strand at 6.119 kb on - strand at 6.329 kb on + strand, within GFF5948 at 6.344 kb on + strand, within GFF5948 at 6.345 kb on - strand, within GFF5948 at 6.359 kb on + strand, within GFF5948 at 6.452 kb on + strand, within GFF5948 at 6.452 kb on + strand, within GFF5948 at 6.452 kb on + strand, within GFF5948 at 6.453 kb on - strand, within GFF5948 at 6.453 kb on - strand, within GFF5948 at 6.453 kb on - strand, within GFF5948 at 6.453 kb on - strand, within GFF5948 at 6.453 kb on - strand, within GFF5948 at 6.455 kb on - strand, within GFF5948 at 6.455 kb on - strand, within GFF5948 at 6.500 kb on + strand, within GFF5948 at 6.501 kb on - strand, within GFF5948 at 6.501 kb on - strand, within GFF5948 at 6.531 kb on - strand, within GFF5948 at 6.716 kb on + strand, within GFF5948 at 6.717 kb on - strand, within GFF5948 at 6.717 kb on - strand, within GFF5948 at 7.358 kb on - strand, within GFF5950 at 7.456 kb on + strand, within GFF5950 at 7.456 kb on + strand, within GFF5950 at 7.456 kb on + strand, within GFF5950 at 7.456 kb on + strand, within GFF5950 at 7.457 kb on - strand, within GFF5950 at 7.457 kb on - strand, within GFF5950 at 7.457 kb on - strand, within GFF5950 at 7.528 kb on + strand, within GFF5950 at 7.528 kb on + strand, within GFF5950 at 7.529 kb on - strand, within GFF5950 at 7.529 kb on - strand, within GFF5950 at 7.612 kb on + strand, within GFF5950 at 7.612 kb on + strand, within GFF5950 at 7.613 kb on - strand, within GFF5950 at 7.718 kb on - strand, within GFF5950 at 7.718 kb on - strand, within GFF5950 at 7.730 kb on - strand, within GFF5950 at 7.735 kb on + strand, within GFF5950 at 7.735 kb on + strand, within GFF5950 at 7.736 kb on - strand, within GFF5950 at 7.736 kb on - strand, within GFF5950 at 7.736 kb on - strand, within GFF5950 at 7.736 kb on - strand, within GFF5950 at 7.741 kb on + strand at 7.741 kb on + strand at 7.741 kb on + strand at 7.742 kb on - strand at 7.762 kb on + strand at 7.762 kb on + strand at 7.763 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 5,189 - GFF5947 0.85 -2.9 5,189 - GFF5947 0.85 -1.2 5,695 + +0.5 5,747 - +2.4 5,747 - -1.6 5,747 - -0.5 5,956 + -0.3 5,957 - +0.0 5,957 - -1.7 5,959 + -1.7 5,959 + +0.9 5,960 - +0.1 5,960 - -0.0 5,965 + -1.9 5,966 - +1.0 5,966 - -0.5 5,995 + +0.6 5,995 + -0.2 5,995 + -1.5 5,995 + -1.0 5,995 + +2.5 5,996 - -1.1 5,996 - -0.3 6,058 + -0.1 6,059 - -0.0 6,059 - +0.8 6,118 + -0.6 6,119 - +1.0 6,329 + GFF5948 0.29 +0.4 6,344 + GFF5948 0.31 +0.6 6,345 - GFF5948 0.31 -1.4 6,359 + GFF5948 0.33 -0.5 6,452 + GFF5948 0.48 -2.2 6,452 + GFF5948 0.48 +0.6 6,452 + GFF5948 0.48 -1.8 6,453 - GFF5948 0.48 +0.7 6,453 - GFF5948 0.48 +0.2 6,453 - GFF5948 0.48 -2.3 6,453 - GFF5948 0.48 -1.3 6,453 - GFF5948 0.48 +0.6 6,455 - GFF5948 0.48 +0.4 6,455 - GFF5948 0.48 +0.4 6,500 + GFF5948 0.55 -0.6 6,501 - GFF5948 0.55 -2.0 6,501 - GFF5948 0.55 -0.7 6,531 - GFF5948 0.60 -2.3 6,716 + GFF5948 0.88 +1.3 6,717 - GFF5948 0.89 -2.3 6,717 - GFF5948 0.89 -1.0 7,358 - GFF5950 0.26 -0.7 7,456 + GFF5950 0.42 -2.6 7,456 + GFF5950 0.42 -1.4 7,456 + GFF5950 0.42 -1.5 7,456 + GFF5950 0.42 +0.3 7,457 - GFF5950 0.43 -1.8 7,457 - GFF5950 0.43 +0.4 7,457 - GFF5950 0.43 +0.6 7,528 + GFF5950 0.55 -2.3 7,528 + GFF5950 0.55 +0.6 7,529 - GFF5950 0.55 -2.6 7,529 - GFF5950 0.55 -2.3 7,612 + GFF5950 0.69 +0.4 7,612 + GFF5950 0.69 +1.5 7,613 - GFF5950 0.69 -0.3 7,718 - GFF5950 0.87 -1.5 7,718 - GFF5950 0.87 -0.8 7,730 - GFF5950 0.89 -0.4 7,735 + GFF5950 0.89 +2.4 7,735 + GFF5950 0.89 +0.4 7,736 - GFF5950 0.90 +0.1 7,736 - GFF5950 0.90 -2.1 7,736 - GFF5950 0.90 +1.8 7,736 - GFF5950 0.90 -1.4 7,741 + -1.5 7,741 + +1.0 7,741 + -0.1 7,742 - -1.4 7,762 + +0.7 7,762 + +0.3 7,763 - -0.0
Or see this region's nucleotide sequence